Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00779 ATGAAGAGGTCCAAAGATGATGTTTACATGAGTTCACAACTCAAACGCCCCATGCTGTCTTCTAGAGGAGAACCCTCGGGGCAACCCCAGGTGATGAGTGGTGGTCAGAAGTTAACGACAAATGATGCCTTGTCATATCTAAAGGCAGTAAGAGAAATGTTTCAGGATGATAAAGAGAAGTACGATGAGTTTTTGGAAGTCATGAAGGATTTCAAGGCCCAAAGAATTGATACAGCTGGTGTCATAGAAAGAGTGAAGGAGCTTTTTAAAGGACATAAGGATTTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGCAATCACACTTCCATTGGAAGATGAACAACCTCCGCAGAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGGGCAAGATTAAGACTCGTTTTCAAGGCAATGACCGTGTTTACAAGACTTTTTTAGACATACTAAATATGTACAGAAAGGAAACCAAGTCTATCACAGTGGTTTACCAAGAGGTTTCCGCCCTCTTCCAAGACCATGCAGATCTTCTTGAGGAGTTTACTCATTTCCTTCCTGATACCTCTGGAGCAGCCTCTGCTCATTTTGCTTCTGCCCGGAATTCTCTTCGTGATAGGAGCTCTGCAATGGCAACAGCAAGGCAAATGCATGTTGACAAGAGAGAAAAGACAACAGCTTTGCATGCTGATCGTGATCTCAGTGTTGATCATCCTGATCCAGAACTGGACCGAGGTGTGATGAGGGCTGATAAGGAGCAGAGAAGACGCGAGAGAGAAAAGGACCGTAGAGAAGAGAGAGATAGGAGAGAACGGGATAGGGATGATAGAGATTATGATAATGACGGTAATCGCGAGCGCTTATCCCACAAGCGAAAATCTGGTCATAGAGCTATAGACCCTAGTACTGAACTATTGCATGATGCAGATGAAAAGCTTGAGATGCGCCCTAACTCGTCCGCTTGTGAGGATAAAAGTTCTTTGAAAAGTATGTGTAGTCCAGTGCTTGCTTTCCTTGAAAAAGTCAAGGAGAAGTTAAGAGGTCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAGGGAAATAATTACCCGACAAGAACTACTGGCATTGGTAGGTGATTTACTGGGAAAATATGCTGATATTATGGAGGGATTTGATGAGTTTGTGACACAATGTGAACAAAATGGATTCCTTGCTGGTGTCATGAATAAAAAATCCTTGTGGAATGAAGGACATGGACAGAAACCAATGAAGGTAGAGGACAAGGACAGAGATCGTGACAGGGATGATGGGGTGAAAGAAAGGGATCGTGAACTTCGAGAAAGAGACAGATCCACTGGAATTGCCAACAAGGATGTTTCTATTCCTAAGGTGTCTTTAAGCAAGGACAAGTATGTAGGAAAACCTATAAATGAATTGGACCTTTCTAACTGTGAACAATGCACTCCTAGTTACCGTCTTCTACCAAAAAATTACCCAATACCGATAGCTAGCCAGAAAACTGAACTAGGTGAAGAAGTATTGAATGATCACTGGGTTTCTGTTACGTCTGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGACGACAGGTTTGAACTTGATATGTTGCTTGAGTCTGTTAATGTGACAAATAAGAGAGTTGAAGAGATCTTAGAGAAAGTTAATGCTAACATAATTCCAGGAGACATCCCAATTCGTATTGAGGAGCACTTAACAGCCCTAAATCTTAGGTGCATCGAACGATTATATGGTGACCATGGGCTTGATGTGATGGATGTATTGAAAAAGAATGCATCTCTTGCTTTACCAGTGATATTAACCCGCTTGAAGCAGAAACAGGAGGAGTGGGCAAGATGCCGCGCAGATTTCAATAAAGTTTGGGCTGAAATATATTCGAAAAATTATCACAAATCACTTGATCACCGAAGCTTTTACTTTAAGCAGCAGGATGCAAAAAGCTTGAGCACTAAAGCCTTATTGGGAGAGATCAAAGAAATTAGCGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCCATTGCTGCTGGAAATAGACGGCCTATTCTTCCTAACTTGGAATTTGAGTATGCTGATCCAGAGATTCACGAAGATTTGTATCAACTTATAAAATATTCATGTGGAGAAGTTTGTACAACGGAACAATTGGATAAAGTCATGAAGATTTGGACAACATTTTTAGAACCTATACTTGGTGTGCCTTCTCGACTGCGCGTTCCTGAAGACACAGAAGATGCTGTCAAGGCTAAGAATGATTCTGCCAAAACTGGCACAACAAGTATTGGCAAGTGTCATAGTAGTCCTGGTGTTGGTCCTACCATGATGAATCCTAAGAATTTAACCACTAGTAGAAATGGGGATGCTAGTGTTCCATTTGAACAATTAAATTCCTGCAAAGAATGGCAAGCAAATGGAGTTGGTGGGGTTAAAGAGGATGATTGTCTCGAATCATACCGTTCTGGCCCTAAGACTGAAACTTTGGGAAGTAGTACACTGCAGGGTAAAATTCATATTGGTGCATCCATTCCTGATGAAGTATCAAGAGTCAATAAGCTAGATCATTCCATTGAACAGTTGGTGAATGCTAATGTCTCACTGTCCTCAGGAATGGAGCAAAGTAATGGAAGAACAAACATAAATAATGCAACAGGACTTGCTGCAACTCCGTCTAGACCTGGTTATGTTTCTAGTGAGGGAGGGCATGATTTACCTTCATCAGAGGGTGCTGATTCTACAAGACTAGATATGTCCACAAACGGGGCCATCACCAAAGACACCAAAGTTCACAGATCTCACAAAGAATCAGTTGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTATGAAGAGGATAACTTTGCAGTTTATGCAAATGCTGGTCTGGAGGCAGTGCATAAAGGAAAAGATTGTAATACCAGTCAACAATACCAAAATAGACACGGGGAACAAAATTGTGGTGAAGCTGGAGGTGAAAATGAAAATGAGAGTGATGGAAGTCCTCATAGATCATCGGATGACAGTGAAAATGCGTCTGAGAATGGTGAGGTTTCTGGTACCGAGTCTGCTGATGGTGAGGAATGTTCTCGAGAAGAACATGAAGAGAATGGGGATCATGAACATGATAATAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCAGATGCCAATGATGTTGAAGGAGATGGAGCCTCGTTGCCATATTCAGAACGCTTTCTTCTCACAGTAAAGCCTCTGGTAAAACATGTTCGCCCGGTGTTGCACGGGAAAGGAAAGAATGTCCAAATTTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATAAACTCATCCTCTGCTGAAAGGAAATGGAGAGGTTCAAATGATACAGGTTCTACTGATCAATATGGCAGGTTCATGAGTTCTCTTTACAGTTTGCTGGATGGTTCTTCTGATAATTCAAAATTTGAAGATGACTGTCGCGCTATTATTGGAACTCAGTCATATGTCTTGTTCACGTTAGACAAGCTAATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCAGTGCTACCGATGAGATGGATAACAAACTTCTTCAACTATATGCATATGAGCAATCAAGAAAACCTGGAAGCTTTGTGGATATAGTTTATCATGAAAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATGTTCGTCTACACCGCCCCGATTGTCTATTCAGTTGATGGATTACGGACACGATAAGCCTGAAGTGACTGCTGTGTCAATAGATCCTAATTTTTCAGCCTATCTGCACAACGACTTCCTATCTGTTGTCCCCGACAGCAAGGAAAAATCAGGAATTTTCTTGAAAAGGAATAAGCTAAAATGTGCCTGGAGTGATGAATTTCCAAGCCAGATTATGGATGGAGTACAAGTTACCAATGGTCTGGAGTGTAAGATTGCTTGCAATTCATCCAAGGTTTCATACGTTTTAGATACTGAAGACTCTCTATTTCGAACAAAACGGAGAAGGAGAATTCCGCATCCAAACAATTCTTATCGTGAACAAACGTCTTCAAACATTTGTTCAAGCAGAGCACAGCGGTTCTGCAAATTATTTTCCATCAAATGA 4254 0.4086 MKRSKDDVYMSSQLKRPMLSSRGEPSGQPQVMSGGQKLTTNDALSYLKAVREMFQDDKEKYDEFLEVMKDFKAQRIDTAGVIERVKELFKGHKDLILGFNTFLPKGYAITLPLEDEQPPQKKPVEFEEAINFVGKIKTRFQGNDRVYKTFLDILNMYRKETKSITVVYQEVSALFQDHADLLEEFTHFLPDTSGAASAHFASARNSLRDRSSAMATARQMHVDKREKTTALHADRDLSVDHPDPELDRGVMRADKEQRRREREKDRREERDRRERDRDDRDYDNDGNRERLSHKRKSGHRAIDPSTELLHDADEKLEMRPNSSACEDKSSLKSMCSPVLAFLEKVKEKLRGPEDYQEFLKCLHIYSREIITRQELLALVGDLLGKYADIMEGFDEFVTQCEQNGFLAGVMNKKSLWNEGHGQKPMKVEDKDRDRDRDDGVKERDRELRERDRSTGIANKDVSIPKVSLSKDKYVGKPINELDLSNCEQCTPSYRLLPKNYPIPIASQKTELGEEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTNKRVEEILEKVNANIIPGDIPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQEEWARCRADFNKVWAEIYSKNYHKSLDHRSFYFKQQDAKSLSTKALLGEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFEYADPEIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPILGVPSRLRVPEDTEDAVKAKNDSAKTGTTSIGKCHSSPGVGPTMMNPKNLTTSRNGDASVPFEQLNSCKEWQANGVGGVKEDDCLESYRSGPKTETLGSSTLQGKIHIGASIPDEVSRVNKLDHSIEQLVNANVSLSSGMEQSNGRTNINNATGLAATPSRPGYVSSEGGHDLPSSEGADSTRLDMSTNGAITKDTKVHRSHKESVGHFKSEREEGELSPNGDYEEDNFAVYANAGLEAVHKGKDCNTSQQYQNRHGEQNCGEAGGENENESDGSPHRSSDDSENASENGEVSGTESADGEECSREEHEENGDHEHDNKAESEGEAEGMADANDVEGDGASLPYSERFLLTVKPLVKHVRPVLHGKGKNVQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRGSNDTGSTDQYGRFMSSLYSLLDGSSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASATDEMDNKLLQLYAYEQSRKPGSFVDIVYHENARVLLHDENIYRIECSSTPPRLSIQLMDYGHDKPEVTAVSIDPNFSAYLHNDFLSVVPDSKEKSGIFLKRNKLKCAWSDEFPSQIMDGVQVTNGLECKIACNSSKVSYVLDTEDSLFRTKRRRRIPHPNNSYREQTSSNICSSRAQRFCKLFSIK 1417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00779 1417 MobiDBLite consensus disorder prediction 219 322 - -
Vivi7g00779 1417 MobiDBLite consensus disorder prediction 776 814 - -
Vivi7g00779 1417 ProSiteProfiles PAH domain profile. 122 192 IPR003822 GO:0006355
Vivi7g00779 1417 MobiDBLite consensus disorder prediction 952 975 - -
Vivi7g00779 1417 MobiDBLite consensus disorder prediction 1055 1083 - -
Vivi7g00779 1417 Pfam Paired amphipathic helix repeat 353 397 IPR003822 GO:0006355
Vivi7g00779 1417 Pfam Paired amphipathic helix repeat 146 189 IPR003822 GO:0006355
Vivi7g00779 1417 Pfam Paired amphipathic helix repeat 59 103 IPR003822 GO:0006355
Vivi7g00779 1417 Pfam C-terminal domain of Sin3a protein 1130 1378 IPR031693 -
Vivi7g00779 1417 MobiDBLite consensus disorder prediction 907 982 - -
Vivi7g00779 1417 FunFam Paired amphipathic helix SIN3-like protein 121 192 - -
Vivi7g00779 1417 Coils Coil 558 578 - -
Vivi7g00779 1417 FunFam Paired amphipathic helix protein SIN3 329 402 - -
Vivi7g00779 1417 MobiDBLite consensus disorder prediction 1005 1096 - -
Vivi7g00779 1417 FunFam Paired amphipathic helix protein Sin3 42 104 - -
Vivi7g00779 1417 Coils Coil 253 273 - -
Vivi7g00779 1417 MobiDBLite consensus disorder prediction 210 329 - -
Vivi7g00779 1417 ProSiteProfiles PAH domain profile. 36 106 IPR003822 GO:0006355
Vivi7g00779 1417 PANTHER SIN3B-RELATED 36 1276 IPR039774 GO:0003714
Vivi7g00779 1417 ProSiteProfiles PAH domain profile. 331 400 IPR003822 GO:0006355
Vivi7g00779 1417 MobiDBLite consensus disorder prediction 14 36 - -
Vivi7g00779 1417 Gene3D Paired amphipathic helix 42 104 IPR036600 GO:0006355
Vivi7g00779 1417 MobiDBLite consensus disorder prediction 779 814 - -
Vivi7g00779 1417 SUPERFAMILY PAH2 domain 336 400 IPR036600 GO:0006355
Vivi7g00779 1417 Gene3D Paired amphipathic helix 330 402 IPR036600 GO:0006355
Vivi7g00779 1417 SMART hdac_interact2seq4b 485 585 IPR013194 -
Vivi7g00779 1417 Pfam Sin3 family co-repressor 487 577 IPR013194 -
Vivi7g00779 1417 MobiDBLite consensus disorder prediction 937 951 - -
Vivi7g00779 1417 MobiDBLite consensus disorder prediction 1027 1042 - -
Vivi7g00779 1417 SUPERFAMILY PAH2 domain 35 105 IPR036600 GO:0006355
Vivi7g00779 1417 Gene3D Paired amphipathic helix 120 193 IPR036600 GO:0006355
Vivi7g00779 1417 MobiDBLite consensus disorder prediction 1 36 - -
Vivi7g00779 1417 MobiDBLite consensus disorder prediction 417 453 - -
Vivi7g00779 1417 SUPERFAMILY PAH2 domain 118 191 IPR036600 GO:0006355
Vivi7g00779 1417 MobiDBLite consensus disorder prediction 422 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00779 Vivi-Chr7 44961874 44973596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00779 28 118 WRKY Transcription Factor Family AT4G12020 56.383 9.72e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi7g00779 Sin3a_C 1.7e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00779 K11644 - gmx:100781798 2075.06