Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00778 ATGAAGAGGTCCAAAGATGATGTTTACATGAGTTCACAACTCAAACGCCCCATGCTGTCTTCTAGAGGAGAACCCTCGGGGCAACCCCAGGTGATGAGTGGTGGTCAGAAGTTAACGACAAATGATGCCTTGTCATATCTAAAGGCAGTAAGAGAAATGTTTCAGGATGATAAAGAGAAGTACGATGAGTTTTTGGAAGTCATGAAGGATTTCAAGGCCCAAAGAATTGATACAGCTGGTGTCATAGAAAGAGTGAAGGAGCTTTTTAAAGGACATAAGGATTTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGCAATCACACTTCCATTGGAAGATGAACAACCTCCGCAGAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGGGCAAGATTAAGACTCGTTTTCAAGGCAATGACCGTGTTTACAAGACTTTTTTAGACATACTAAATATGTACAGAAAGGAAACCAAGTCTATCACAGTGGTTTACCAAGAGGTTTCCGCCCTCTTCCAAGACCATGCAGATCTTCTTGAGGAGTTTACTCATTTCCTTCCTGATACCTCTGGAGCAGCCTCTGCTCATTTTGCTTCTGCCCGGAATTCTCTTCGTGATAGGAGCTCTGCAATGGCAACAGCAAGGCAAATGCATGTTGACAAGAGAGAAAAGACAACAGCTTTGCATGCTGATCGTGATCTCAGTGTTGATCATCCTGATCCAGAACTGGACCGAGGTGTGATGAGGGCTGATAAGGAGCAGAGAAGACGCGAGAGAGAAAAGGACCGTAGAGAAGAGAGAGATAGGAGAGAACGGGATAGGGATGATAGAGATTATGATAATGACGGTAATCGCGAGCGCTTATCCCACAAGCGAAAATCTGGTCATAGAGCTATAGACCCTAGTACTGAACTATTGCATGATGCAGATGAAAAGCTTGAGATGCGCCCTAACTCGTCCGCTTGTGAGGATAAAAGTTCTTTGAAAAGTATGTGTAGTCCAGTGCTTGCTTTCCTTGAAAAAGTCAAGGAGAAGTTAAGAGGTCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAGGGAAATAATTACCCGACAAGAACTACTGGCATTGGTAGGTGATTTACTGGGAAAATATGCTGATATTATGGAGGGATTTGATGAGTTTGTGACACAATGTGAACAAAATGAAGGATTCCTTGCTGGTGTCATGAATAAAAAATCCTTGTGGAATGAAGGACATGGACAGAAACCAATGAAGGTAGAGGACAAGGACAGAGATCGTGACAGGGATGATGGGGTGAAAGAAAGGGATCGTGAACTTCGAGAAAGAGACAGATCCACTGGAATTGCCAACAAGGATGTTTCTATTCCTAAGGTGTCTTTAAGCAAGGACAAGTATGTAGGAAAACCTATAAATGAATTGGACCTTTCTAACTGTGAACAATGCACTCCTAGTTACCGTCTTCTACCAAAAAATTACCCAATACCGATAGCTAGCCAGAAAACTGAACTAGGTGAAGAAGTATTGAATGATCACTGGGTTTCTGTTACGTCTGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGACGACAGGTTTGAACTTGATATGTTGCTTGAGTCTGTTAATGTGACAAATAAGAGAGTTGAAGAGATCTTAGAGAAAGTTAATGCTAACATAATTCCAGGAGACATCCCAATTCGTATTGAGGAGCACTTAACAGCCCTAAATCTTAGGTGCATCGAACGATTATATGGTGACCATGGGCTTGATGTGATGGATGTATTGAAAAAGAATGCATCTCTTGCTTTACCAGTGATATTAACCCGCTTGAAGCAGAAACAGGAGGAGTGGGCAAGATGCCGCGCAGATTTCAATAAAGTTTGGGCTGAAATATATTCGAAAAATTATCACAAATCACTTGATCACCGAAGCTTTTACTTTAAGCAGCAGGATGCAAAAAGCTTGAGCACTAAAGCCTTATTGGGAGAGATCAAAGAAATTAGCGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCCATTGCTGCTGGAAATAGACGGCCTATTCTTCCTAACTTGGAATTTGAGTATGCTGATCCAGAGATTCACGAAGATTTGTATCAACTTATAAAATATTCATGTGGAGAAGTTTGTACAACGGAACAATTGGATAAAGTCATGAAGATTTGGACAACATTTTTAGAACCTATACTTGGTGTGCCTTCTCGACTGCGCGTTCCTGAAGACACAGAAGATGCTGTCAAGGCTAAGAATGATTCTGCCAAAACTGGCACAACAAGTATTGGCAAGTGTCATAGTAGTCCTGGTGTTGGTCCTACCATGATGAATCCTAAGAATTTAACCACTAGTAGAAATGGGGATGCTAGTGTTCCATTTGAACAATTAAATTCCTGCAAAGAATGGCAAGCAAATGGAGTTGGTGGGGTTAAAGAGGATGATTGTCTCGAATCATACCGTTCTGGCCCTAAGACTGAAACTTTGGGAAGTAGTACACTGCAGGGTAAAATTCATATTGGTGCATCCATTCCTGATGAAGTATCAAGAGTCAATAAGCTAGATCATTCCATTGAACAGTTGGTGAATGCTAATGTCTCACTGTCCTCAGGAATGGAGCAAAGTAATGGAAGAACAAACATAAATAATGCAACAGGACTTGCTGCAACTCCGTCTAGACCTGGTTATGTTTCTAGTGAGGGAGGGCATGATTTACCTTCATCAGAGGGTGCTGATTCTACAAGACTAGATATGTCCACAAACGGGGCCATCACCAAAGACACCAAAGTTCACAGATCTCACAAAGAATCAGTTGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTATGAAGAGGATAACTTTGCAGTTTATGCAAATGCTGGTCTGGAGGCAGTGCATAAAGGAAAAGATTGTAATACCAGTCAACAATACCAAAATAGACACGGGGAACAAAATTGTGGTGAAGCTGGAGGTGAAAATGAAAATGAGAGTGATGGAAGTCCTCATAGATCATCGGATGACAGTGAAAATGCGTCTGAGAATGGTGAGGTTTCTGGTACCGAGTCTGCTGATGGTGAGGAATGTTCTCGAGAAGAACATGAAGAGAATGGGGATCATGAACATGATAATAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCAGATGCCAATGATGTTGAAGGAGATGGAGCCTCGTTGCCATATTCAGAACGCTTTCTTCTCACAGTAAAGCCTCTGGTAAAACATGTTCGCCCGGTGTTGCACGGGAAAGGAAAGAATGTCCAAATTTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATAAACTCATCCTCTGCTGAAAGGAAATGGAGAGGTTCAAATGATACAGGTTCTACTGATCAATATGGCAGGTTCATGAGTTCTCTTTACAGTTTGCTGGATGGTTCTTCTGATAATTCAAAATTTGAAGATGACTGTCGCGCTATTATTGGAACTCAGTCATATGTCTTGTTCACGTTAGACAAGCTAATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCAGTGCTACCGATGAGATGGATAACAAACTTCTTCAACTATATGCATATGAGCAATCAAGAAAACCTGGAAGCTTTGTGGATATAGTTTATCATGAAAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATGTTCGTCTACACCGCCCCGATTGTCTATTCAGTTGATGGATTACGGACACGATAAGCCTGAAGTGACTGCTGTGTCAATAGATCCTAATTTTTCAGCCTATCTGCACAACGACTTCCTATCTGTTGTCCCCGACAGCAAGGAAAAATCAGGAATTTTCTTGAAAAGGAATAAGCTAAAATGTGCCTGGAGTGATGAATTTCCAAGCCAGATTATGGATGGAGTACAAGTTACCAATGGTCTGGAGTGTAAGATTGCTTGCAATTCATCCAAGGTTTCATACGTTTTAGATACTGAAGACTCTCTATTTCGAACAAAACGGAGAAGGAGAATTCCGCATCCAAACAATTCTTATCGTGAACAAACGTCTTCAAACATTTGTTCAAGCAGAGCACAGCGGTTCTGCAAATTATTTTCCATCAAATGA 4257 0.4085 MKRSKDDVYMSSQLKRPMLSSRGEPSGQPQVMSGGQKLTTNDALSYLKAVREMFQDDKEKYDEFLEVMKDFKAQRIDTAGVIERVKELFKGHKDLILGFNTFLPKGYAITLPLEDEQPPQKKPVEFEEAINFVGKIKTRFQGNDRVYKTFLDILNMYRKETKSITVVYQEVSALFQDHADLLEEFTHFLPDTSGAASAHFASARNSLRDRSSAMATARQMHVDKREKTTALHADRDLSVDHPDPELDRGVMRADKEQRRREREKDRREERDRRERDRDDRDYDNDGNRERLSHKRKSGHRAIDPSTELLHDADEKLEMRPNSSACEDKSSLKSMCSPVLAFLEKVKEKLRGPEDYQEFLKCLHIYSREIITRQELLALVGDLLGKYADIMEGFDEFVTQCEQNEGFLAGVMNKKSLWNEGHGQKPMKVEDKDRDRDRDDGVKERDRELRERDRSTGIANKDVSIPKVSLSKDKYVGKPINELDLSNCEQCTPSYRLLPKNYPIPIASQKTELGEEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTNKRVEEILEKVNANIIPGDIPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQEEWARCRADFNKVWAEIYSKNYHKSLDHRSFYFKQQDAKSLSTKALLGEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFEYADPEIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPILGVPSRLRVPEDTEDAVKAKNDSAKTGTTSIGKCHSSPGVGPTMMNPKNLTTSRNGDASVPFEQLNSCKEWQANGVGGVKEDDCLESYRSGPKTETLGSSTLQGKIHIGASIPDEVSRVNKLDHSIEQLVNANVSLSSGMEQSNGRTNINNATGLAATPSRPGYVSSEGGHDLPSSEGADSTRLDMSTNGAITKDTKVHRSHKESVGHFKSEREEGELSPNGDYEEDNFAVYANAGLEAVHKGKDCNTSQQYQNRHGEQNCGEAGGENENESDGSPHRSSDDSENASENGEVSGTESADGEECSREEHEENGDHEHDNKAESEGEAEGMADANDVEGDGASLPYSERFLLTVKPLVKHVRPVLHGKGKNVQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRGSNDTGSTDQYGRFMSSLYSLLDGSSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASATDEMDNKLLQLYAYEQSRKPGSFVDIVYHENARVLLHDENIYRIECSSTPPRLSIQLMDYGHDKPEVTAVSIDPNFSAYLHNDFLSVVPDSKEKSGIFLKRNKLKCAWSDEFPSQIMDGVQVTNGLECKIACNSSKVSYVLDTEDSLFRTKRRRRIPHPNNSYREQTSSNICSSRAQRFCKLFSIK 1418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00778 1418 MobiDBLite consensus disorder prediction 219 322 - -
Vivi7g00778 1418 MobiDBLite consensus disorder prediction 423 454 - -
Vivi7g00778 1418 MobiDBLite consensus disorder prediction 938 952 - -
Vivi7g00778 1418 MobiDBLite consensus disorder prediction 1028 1043 - -
Vivi7g00778 1418 Pfam Sin3 family co-repressor 488 578 IPR013194 -
Vivi7g00778 1418 ProSiteProfiles PAH domain profile. 122 192 IPR003822 GO:0006355
Vivi7g00778 1418 MobiDBLite consensus disorder prediction 908 983 - -
Vivi7g00778 1418 MobiDBLite consensus disorder prediction 780 815 - -
Vivi7g00778 1418 MobiDBLite consensus disorder prediction 1006 1097 - -
Vivi7g00778 1418 Pfam Paired amphipathic helix repeat 353 397 IPR003822 GO:0006355
Vivi7g00778 1418 Pfam Paired amphipathic helix repeat 146 189 IPR003822 GO:0006355
Vivi7g00778 1418 Pfam Paired amphipathic helix repeat 59 103 IPR003822 GO:0006355
Vivi7g00778 1418 MobiDBLite consensus disorder prediction 1056 1084 - -
Vivi7g00778 1418 FunFam Paired amphipathic helix SIN3-like protein 121 192 - -
Vivi7g00778 1418 FunFam Paired amphipathic helix protein Sin3 42 104 - -
Vivi7g00778 1418 Coils Coil 253 273 - -
Vivi7g00778 1418 MobiDBLite consensus disorder prediction 210 329 - -
Vivi7g00778 1418 Pfam C-terminal domain of Sin3a protein 1131 1379 IPR031693 -
Vivi7g00778 1418 Gene3D Paired amphipathic helix 120 193 IPR036600 GO:0006355
Vivi7g00778 1418 ProSiteProfiles PAH domain profile. 36 106 IPR003822 GO:0006355
Vivi7g00778 1418 PANTHER SIN3B-RELATED 36 1277 IPR039774 GO:0003714
Vivi7g00778 1418 MobiDBLite consensus disorder prediction 418 454 - -
Vivi7g00778 1418 ProSiteProfiles PAH domain profile. 331 400 IPR003822 GO:0006355
Vivi7g00778 1418 MobiDBLite consensus disorder prediction 953 976 - -
Vivi7g00778 1418 MobiDBLite consensus disorder prediction 14 36 - -
Vivi7g00778 1418 Gene3D Paired amphipathic helix 42 104 IPR036600 GO:0006355
Vivi7g00778 1418 SUPERFAMILY PAH2 domain 336 400 IPR036600 GO:0006355
Vivi7g00778 1418 Gene3D Paired amphipathic helix 330 402 IPR036600 GO:0006355
Vivi7g00778 1418 MobiDBLite consensus disorder prediction 777 815 - -
Vivi7g00778 1418 FunFam Paired amphipathic helix protein SIN3 329 402 - -
Vivi7g00778 1418 SUPERFAMILY PAH2 domain 35 105 IPR036600 GO:0006355
Vivi7g00778 1418 MobiDBLite consensus disorder prediction 1 36 - -
Vivi7g00778 1418 SUPERFAMILY PAH2 domain 118 191 IPR036600 GO:0006355
Vivi7g00778 1418 Coils Coil 559 579 - -
Vivi7g00778 1418 SMART hdac_interact2seq4b 486 586 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00778 Vivi-Chr7 44961874 44973596 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00778 28 118 WRKY Transcription Factor Family AT4G12020 56.383 9.73e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi7g00778 Sin3a_C 1.7e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00778 K11644 - gmx:100781798 2081.6