Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00700 ATGGATCCGGGTTCGATGATGAACGAGGGTTCATTTCCGAATGGGAGTGGGAATACGACGCCGTTTAGTTTAGCGGAGATCTGGCAGTTTCCGCCTGCGATTAATGGCGGCGGAGGTGGATTGGGACTTAGGAGGCCGCAATTTGGAAACGGTTTGGGACAGTTTGGGGAATTTGGAACCGGTTCGAACCGGGATGTGGATGGACCGGACCAGAGAGTTGTTTTGAACCATGGTGTTGTTGGTGGTGGGAAGAAGAGGCGTGACTCGGAAGATGTTGATTCTCCTAAGTGTGTTTCCACTAGTAATGGCGGTACCAATGCTTTGAATGATGGTGATGGAAAACGGTCGAAAGCGTTAGGGAACAGGAATGATGATGGTAAAGTTGAAGGAGAAGCCAGTTCAGGAAAGCCTGCGGAGCAAAGCAGTAAGCCGCCGCCTCCTGACCCTCCGAAGCAAGATTATATTCATGTTCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAACGCGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTAGTTCCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAAATAATTAATTATATTCAATCACTTCAGCGCCAAGTGGAGTTTTTGTCGATGAAACTTGAAGCAGTTAATTCTAGACTTAACACTGGCATTGAAGCGTTTCCTCCAAAAGATTATGGTCAACAAACATATGATCTAGCCAGCATGCCATTTGTTTCACAAGCTACAAGAGAGCCAAGCAGGGGTTCATCCCCAGAATGGTTACATATGCAGGTAGGTGGCGGTTTCGAAAGAACATCGTAG 855 0.4643 MDPGSMMNEGSFPNGSGNTTPFSLAEIWQFPPAINGGGGGLGLRRPQFGNGLGQFGEFGTGSNRDVDGPDQRVVLNHGVVGGGKKRRDSEDVDSPKCVSTSNGGTNALNDGDGKRSKALGNRNDDGKVEGEASSGKPAEQSSKPPPPDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEAFPPKDYGQQTYDLASMPFVSQATREPSRGSSPEWLHMQVGGGFERTS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00700 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 230 IPR036638 GO:0046983
Vivi7g00700 284 MobiDBLite consensus disorder prediction 115 132 - -
Vivi7g00700 284 MobiDBLite consensus disorder prediction 9 25 - -
Vivi7g00700 284 Coils Coil 210 230 - -
Vivi7g00700 284 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Vivi7g00700 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 213 IPR011598 GO:0046983
Vivi7g00700 284 FunFam Basic helix-loop-helix transcription factor 160 232 - -
Vivi7g00700 284 MobiDBLite consensus disorder prediction 1 154 - -
Vivi7g00700 284 Gene3D - 160 236 IPR036638 GO:0046983
Vivi7g00700 284 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 86 252 IPR024097 GO:0006355
Vivi7g00700 284 CDD bHLH_AtBPE_like 154 238 - -
Vivi7g00700 284 MobiDBLite consensus disorder prediction 95 109 - -
Vivi7g00700 284 MobiDBLite consensus disorder prediction 260 284 - -
Vivi7g00700 284 SMART finulus 169 219 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00700 Vivi-Chr7 42287366 42290284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00700 1 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 56.855 1.12e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi7g00700 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00700 - - gmx:100784478 375.17