Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00647 ATGGCCGGTGTTTCGAGTCGAACACGAAGCACACTGGCTGGTGTTTCGGGTCGTACTCGAAGTAAGAATGTTCCGCTGTTCGGTAGTCTTTCATTTCATGGCTTGTTTAAATCTAAGCGCAGAAAAAGTGATACGGGTTTGGGGTCTAAAAAAAGGAAGCCAAATGAAGAATCTCTTGTGTTGCATGAACAGGTTAAGTTAATTTCTGAGGGTTGTGTTGAACAAGTACAAAATGTTGATGTGGAAGATTGTGAAAGAAACAACTTTGAGGGATGTGTTGGTGTTGAAAAGGAAGTAGAGAAAGAGAAAAGTGGAGGAATTGGTGAGTTGGCTGAAAAAGATGAAATCTTTGATGATGAGAAGGGTGGGTTGTTATCTGAAAAGCTGATTATAGATCCAGAGGATGAATCTGATGATGATGATGATGATAGTGAAGATGAATCTGATGATGATGGTGATGATGATGACGGAAGTGAAGAAAGTGAGGAAATTGAGACTAGTGATGAAGAATATCAAGTTGATGAGGTGAATGAAGTTTCTGACAGTGATGATAGCGGTACTTATGTTGATGATGATGATAGTGGTGAGGAGAAAGAAGAGAGGACAAAGAGTTGGAAGAAGAAGGAGGAGAAGAAAAAGGGTTCGGAGGAGGAGGAGGAGAAAATGGGTTGGGAGGAAGAGAAGAAAATGGGTTGGAAGAAGGAGGAGGAGGAGAAGAACATGGATCGGGAGGAGGAGAGGAAAATGAGTTGGGAGGAGAAGAACATGGGTTTGGAGGAGGAGGAGGAGAGGAAAATGTATTGGGAGGAGACGGAGGAGGTGGTGGTGGAGGAGGAGGAGAAGAAAATGAGATGGGAGGAGACGGAGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGAAAATGAGTTGGGAGGAGAAGGAGGATGAGGTGGTGGTGGAAGAGGAGGAGAAGAAAATGTGTTGGGAGGAGACGGAGGTGGTGGTGGTGGTGGAGGAGGAGAGGAAAAAGTGTTGGGAAGAGACGGAGGTGGTGGTGGTGGAGGAGAAGAAAAAGTGTTGGGAAGAGACGGAGGTGGTGGTGGTGGAGGAGGATGAGAAGAAAATGAGTTGGGAGGAGAAGGAGGAGGATGAGAAGAAAATGAGTTGGGAGGAGAAGGAGGAGGAGAAGAAAATGTGTTGGGAGGAGACGGAGGAGTTGGTGGTGGAGGAGGAGAAAGAGGCGGATTTGGATATGATTTGGCAAGAATATAGCAATGGGCTGGCAGAGATGGGGAGAGAGGCCAATGGCCAAGGTTCTGCAAACAATGATGAATTGGAGCATGCATATGAAGGTAATGTAAGATCCTCTAATGCCTTAAAAAAAAAGGGTTCTTTTGTTCCAATGGAGGCTCCTTCTTCAAAATTGCATCAAGCACCGGAGACACTGACATCAAAAGGCCTGCAAATGAAAGTGAGAAATGTCTCTGATGACGATGATAATGTTTATGTTGGCAAAACCATTTCCAAGTCCAAATCCAAATCCAAAGAAAGTGTGGTTATTGGTGATTGTGTTGAAGAAAAAATGCAATCTTTTCGAGGTATAGGTGTTGGGGATGAAAGTGATTCTTGTATTCAAACACAACAGAAGAAGGTGAAGGCTTCAGATAAACAGCAAATGATGGAGATGAAGGAAAGTATTTATAAAGGTAGAGCTAACACCCATAGTGGCGGGAAGAACAAATCCACGGATCAAAATGGTTCGAATCAAAGGGGAAAAAGCACAGTTTTTAGGCCGAAGGAGTTGCGTTTAGTCGAACTCCTTGCTGAATACTATTGGGGAAACAAGAATAATAAAATTAAGAATGATTCACCTGTGTTGGAGATAAAAGATGTTATTCGCCAAGATACACGCCCACCACCTGTTTGTAACGAGACAACTCCATTGATATGGAGCCTTAAAAAGGCGGAGAAAGTGCAAAAGACCAAGAACGAGGAGGAGGAGGAAGTACTGTGGGATCAAATGGATACAAGCCTCAGAGAACTCGAAGCTGAATCCATGATCGGAAATTTGGGGACCAATGAAGCTACTCAGGAAAAAATCGGAAGTCCATCCTCTGACTGTGAACATGATATCTATCTTGATGAAGAGATCGGTGTATATTGCAGGCGGTGTGGTTGGGTTGTTACTGACATTAAAGATGTCTCGCCACAAGTGGTTGATAAATTTCCCTATGAAGGTTCGGGACAAAGGGCTTTGTTTGGTGATGCAAATGTCGCACACTTTCATGGCTCTCACTTCAATGTTTCTGATCATGACTCGGAGACTAATTTCTCTTGCGATGAAAGAACAGTTTGGGACCTAATTCCTGATGTAAAACAGACCTTATATTCTCACCAACAAGAAGGTTTTGAGTTCATTTGGAATAAGTTAGTAGGAAACATGGAGCTTCGAGGGTTAAAGAACACCAATCTTCAAAGGGAGGGTGGTTGCATTATTTCACATGCTCCTGGTACTGGAAAGACAAAGCTGACAATAATGTTTCTCAAGGCTTATTTAAAAGTTTTTCCGAAATGCTTGCCGGTCATTGTTGCTCCAGCGGGTTTGTTGCTTACTTGGGAAGACGAATTCAAAAAATGGGACATAGGTGTTCCATTTCACAATTTGAACAATCCTGAGTTATCTGTTAAAGAGCATGATGATGTTGTTAATGCAACTGATTGGTCTAATACAGGGAGGCATAGTAAAGACGAGACGCGGATGGCTAAACTGATTTCGTGGTTCAAAGAAACGAGCATTCTGGGAATCAGTTACACTTTGTTCCAGGATCTAGCCTACGGAGAAGTGGAATGCACAGATAAGAAAAAGAATAAGCATGCGAAAGGATGGGAATGGGAGTCCGAAGATAAGAAATATAATAAACAGAAGAGAAAAGAAAACAGTTATATGAGGAAGGCTTTGCTTGAAGCTCCTGGTTTGTTGGTTCTAGATGAAGGACATACGCCAAGAAATGCAAGAAGTCTTGTTTGGAAGGTGTTGTCAAAAGTTCAAACAAAGAAGCGAATTATGCTTTCTGGAACTCCTTTCCAGAATAATTTCTTGGAACTGTACAACACTTTCAGCATAGTGAAGCCTTCTTTTCCTAACACGATACCGCCCAAGCTGAAAAAGTTTTGCCAGAAACATAAGAAAGCAGCAAAAGAAGAATGGAGTTGGGAACCGGTTACTGGAAACAGTACAACAGGAAATACTTCTGATGATAAGATCAAGCATTTGAAGTTACTAATGGCTCCCTTTGTTCATGTTTACAAAGGCGCGATTCTTCAAAAGAAGCTTTTCGGGTTAAGAGAATGTGTGCTTCGTTTGAAGCCGGACAGGTTTCAGAAACAAATTCTTGAGGGCATTAAAAGTTCTCAGAACATATTGAAATTTGAGCATAAGCTGATACTGGCATCGGTCCATCCGTCTCTATTCCTCGAATGCAAACTTTTGGAAGAAGAAGAAGCTGTTGTCGACAAGGAACAGCTTGAAAAACTTAGATTGAATCCAAATATCGGCGTCAAAACAAAATTTTTGGTGGAGTTTGTTAATCTTTGTGTTGCTGTTAATGAAAAAGTTCTTGTGTTCAGCCAATTCATTCCCCCTTTACGCTTAATTGTTGAGCAATTAAACTCAATCTTCAATTGGGCCGAGGGGAAGGAAATACTCTACATGGATGGCAATATAGATCTGAAGGAAAAGCAGTCTATAATCCACAACTTCAACGATGCAAACAGCAAAGCTAAGATTCTACTTGCATGTACGAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCGTCGAGGGTCGTGCTACTTGATGTTGTATGGAATCCTTCTGTCGAGCGACAGGCTATCAGTAGAGCATATAGGATTGGACAAAAGAGAGTTGTGTACACGTACCATCTGCTCACGCACGAGACTACCGAGTGCGTCAAATATTTCAAACAGGCCGAAAAGGACCGGTTGTCTGAACTAGTATTTTCGGATAATCACATGGGCAAAAACCGTGCGGCGAACTTTAAAGATGGTATTCTTGATCTAATGCTTCAGCATGAAAAACTTAAAGACATGTTTGTTGAGTGTGTGGTACAGCCAAAGGAAAGAGATCTGGTGGAGAGTTTTTATTATTGA 4149 0.4232 MAGVSSRTRSTLAGVSGRTRSKNVPLFGSLSFHGLFKSKRRKSDTGLGSKKRKPNEESLVLHEQVKLISEGCVEQVQNVDVEDCERNNFEGCVGVEKEVEKEKSGGIGELAEKDEIFDDEKGGLLSEKLIIDPEDESDDDDDDSEDESDDDGDDDDGSEESEEIETSDEEYQVDEVNEVSDSDDSGTYVDDDDSGEEKEERTKSWKKKEEKKKGSEEEEEKMGWEEEKKMGWKKEEEEKNMDREEERKMSWEEKNMGLEEEEERKMYWEETEEVVVEEEEKKMRWEETEVVVVVEEEEEKMSWEEKEDEVVVEEEEKKMCWEETEVVVVVEEERKKCWEETEVVVVEEKKKCWEETEVVVVEEDEKKMSWEEKEEDEKKMSWEEKEEEKKMCWEETEELVVEEEKEADLDMIWQEYSNGLAEMGREANGQGSANNDELEHAYEGNVRSSNALKKKGSFVPMEAPSSKLHQAPETLTSKGLQMKVRNVSDDDDNVYVGKTISKSKSKSKESVVIGDCVEEKMQSFRGIGVGDESDSCIQTQQKKVKASDKQQMMEMKESIYKGRANTHSGGKNKSTDQNGSNQRGKSTVFRPKELRLVELLAEYYWGNKNNKIKNDSPVLEIKDVIRQDTRPPPVCNETTPLIWSLKKAEKVQKTKNEEEEEVLWDQMDTSLRELEAESMIGNLGTNEATQEKIGSPSSDCEHDIYLDEEIGVYCRRCGWVVTDIKDVSPQVVDKFPYEGSGQRALFGDANVAHFHGSHFNVSDHDSETNFSCDERTVWDLIPDVKQTLYSHQQEGFEFIWNKLVGNMELRGLKNTNLQREGGCIISHAPGTGKTKLTIMFLKAYLKVFPKCLPVIVAPAGLLLTWEDEFKKWDIGVPFHNLNNPELSVKEHDDVVNATDWSNTGRHSKDETRMAKLISWFKETSILGISYTLFQDLAYGEVECTDKKKNKHAKGWEWESEDKKYNKQKRKENSYMRKALLEAPGLLVLDEGHTPRNARSLVWKVLSKVQTKKRIMLSGTPFQNNFLELYNTFSIVKPSFPNTIPPKLKKFCQKHKKAAKEEWSWEPVTGNSTTGNTSDDKIKHLKLLMAPFVHVYKGAILQKKLFGLRECVLRLKPDRFQKQILEGIKSSQNILKFEHKLILASVHPSLFLECKLLEEEEAVVDKEQLEKLRLNPNIGVKTKFLVEFVNLCVAVNEKVLVFSQFIPPLRLIVEQLNSIFNWAEGKEILYMDGNIDLKEKQSIIHNFNDANSKAKILLACTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKRVVYTYHLLTHETTECVKYFKQAEKDRLSELVFSDNHMGKNRAANFKDGILDLMLQHEKLKDMFVECVVQPKERDLVESFYY 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00647 1382 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 814 1038 IPR014001 -
Vivi7g00647 1382 SMART helicmild6 1209 1298 IPR001650 -
Vivi7g00647 1382 MobiDBLite consensus disorder prediction 562 587 - -
Vivi7g00647 1382 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1186 1339 IPR001650 -
Vivi7g00647 1382 MobiDBLite consensus disorder prediction 565 587 - -
Vivi7g00647 1382 CDD SF2_C_SNF 1177 1309 - -
Vivi7g00647 1382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 983 1337 IPR027417 -
Vivi7g00647 1382 Coils Coil 234 261 - -
Vivi7g00647 1382 Gene3D - 1107 1374 IPR027417 -
Vivi7g00647 1382 Gene3D - 759 1075 IPR038718 -
Vivi7g00647 1382 Coils Coil 207 227 - -
Vivi7g00647 1382 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 350 1375 IPR044567 GO:0080188
Vivi7g00647 1382 SMART ultradead3 784 1050 IPR014001 -
Vivi7g00647 1382 MobiDBLite consensus disorder prediction 196 264 - -
Vivi7g00647 1382 MobiDBLite consensus disorder prediction 1 26 - -
Vivi7g00647 1382 Pfam Helicase conserved C-terminal domain 1191 1298 IPR001650 -
Vivi7g00647 1382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 775 1056 IPR027417 -
Vivi7g00647 1382 MobiDBLite consensus disorder prediction 132 195 - -
Vivi7g00647 1382 MobiDBLite consensus disorder prediction 366 390 - -
Vivi7g00647 1382 MobiDBLite consensus disorder prediction 98 131 - -
Vivi7g00647 1382 MobiDBLite consensus disorder prediction 98 264 - -
Vivi7g00647 1382 MobiDBLite consensus disorder prediction 296 315 - -
Vivi7g00647 1382 MobiDBLite consensus disorder prediction 40 59 - -
Vivi7g00647 1382 Pfam SNF2-related domain 809 1133 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00647 Vivi-Chr7 39062773 39067790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00647 1196 1347 RAD5 or RAD16-like Gene Family AT5G43530 36.184 2.85e-16 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi7g00647 SNF2_N 2.6e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00647 K10875 - gmx:100806733 847.425