Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00602 ATGGAAGAGAGAAATGGTTGTGAGAAACTTGATGAGGTTATGCTTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAACTAGTTGGATTTTATCTCAAGAGAAAGATTCAACAACGCCCTCTTGCTATTGAGCTCATCAAGCAGCTTGATATTTATAAATTTGATCCTTGGGATCTTCCAAAGTTGGCAAGTACAGGAGAGAAAGAGTGGTATTTTTACTGTCCAAGAGACCGAAAGTACAGGAACAGTGCAAGACCTAATAGGGTAACAAGAGGTGGGTTTTGGAAAGCTACTGGAACAGACAGGCCTATTTATTCCTCAGAGGGTTCGAAGTGTATTGGTTTGAAGAAGTCATTGGTTTTCTACAAAGGTAGAGCTGCTAAAGGTGCAAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTCTCATTGACTCATCATCATCATCTCCAAAGAAGTATGGAGACAAAACCATTCCTGCTAGTGAATCTTGGGCAATCTGCAGAATATTCAAGAAAACCAATGCAACAGCTCAAAGAGCACTCTCTCACTCATGGGTCCCTCCTTTACTTGAAACATCAACTTCCAATGTTCTAACAAATGATGGAAACCACAACCAATTTTGTTCATCAAACATGATGTTAACAAAGAAACCCACCTATGCAAACCAATTTTGTACTACTAATAACCACAATAACACAACACAAAACTTAACCTCTTCTAGTGGCACAACACTATGTCCTTTAGATGTTCCATCTTATCATAACAATAATCCAATCATTGATCCATTGATTTACAAACCCTTATACCGTTTACCGATTTCGAATGATCAAGACCTTAACCCTAGCACCGGCTTAGTATTCTCTTCTCCTCTTGAAACTTCTTGTAACAAAACTTCAATGGATGTTTCTTCCTTGCTATTGGGTATGTCATGTGAAGGAACAACCTCAAACTATGTTGACCATTACAATAATGGATATCCATTGATGGCTAATAGTATTCCTAATGTGAATGAGCAAGAGTTGGAGAGAGTGAGATCCATTGGATTCCCATTTAGTGTGCCTTTCAATATTGGTGAAGCATGGAAGTCAAGTCTTGTTTGGGATGTTGCTTCTTGTTCTTCGGATGAACCCTCTAGCTATTCTACTACCAAGTGTTACACTTAG 1170 0.388 MEERNGCEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLAIELIKQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTRGGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGAKTDWMMHEFRLPSLIDSSSSSPKKYGDKTIPASESWAICRIFKKTNATAQRALSHSWVPPLLETSTSNVLTNDGNHNQFCSSNMMLTKKPTYANQFCTTNNHNNTTQNLTSSSGTTLCPLDVPSYHNNNPIIDPLIYKPLYRLPISNDQDLNPSTGLVFSSPLETSCNKTSMDVSSLLLGMSCEGTTSNYVDHYNNGYPLMANSIPNVNEQELERVRSIGFPFSVPFNIGEAWKSSLVWDVASCSSDEPSSYSTTKCYT 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00602 389 Gene3D NAC domain 23 179 IPR036093 GO:0003677|GO:0006355
Vivi7g00602 389 FunFam NAC domain-containing protein 35 23 177 - -
Vivi7g00602 389 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Vivi7g00602 389 SUPERFAMILY NAC domain 13 174 IPR036093 GO:0003677|GO:0006355
Vivi7g00602 389 ProSiteProfiles NAC domain profile. 14 174 IPR003441 GO:0003677|GO:0006355
Vivi7g00602 389 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00602 Vivi-Chr7 36710259 36712756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00602 1 265 NAC Transcription Factor Family AT1G26870 60.517 9.25e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi7g00602 NAM 4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00602 - - vra:106768003 473.011