Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00591 ATGGACATGACCTCAAGAAACATAGATGTTGATTCTCAAACACCACCATCGATTCCACCACAACCCAACAACAACAATAACAACATAACACCAACAACCTTAAAGTCCTCACCTTTTACCAACGGCACACACAAACGCCACCTTACCACCATCACCACCACCACTCCACCACCGTTACAACAACCACCAACATCACCCATGTTTGTTTCTTACAAAGAATGTCTCAAAAACCATGCTGCGTCCCTAGGTGGACATGCACTTGACGGATGTGGAGAATTCATGCCTTCATCAACCGTTAATCCAAACGACCCTAGATCCCTCAAATGTGCTGCTTGTGGTTGTCACCGGAACTTCCACCGCCGTGAACCTCAAGAACAACACCTCATCACCACCACAAACACCACCAACATCACCACCGCCACAACCAACACCACCGCCAACCCCGCCACCAACGCCACTTTTCTTAACTGCATCTACACTCCCCCATCAACAACCGTTCCACCACCACAACCACCACCGCCATTACAACTCCCACACCGTGGCCCGATTAGTCAAAGCACAAGCCCAAGTCAAAGCACAAGCCCAACCTCAAGCCCAAGCCCAACTTCAAGCCCATCCTCTCCACCACCACTCTCACATTTACCACCTTATCATCATCAACACTCTTCAGCACCTCACATGCTGCTAGCACTTGGAAATGCTTACTCAACACCACCACAATCTGATCATGATCAACATCAACACCAAAATCAACCCCATCAGAGAAATCTCAATTTTTCTTCTTCCGTGATTAAGCTCGAGAACCCGAACAGCAACAACAACAGCAACAACTCGAGCGGTGCGAGAAAGAGGTACAGGACAAAATTCAGCAAGGAGCAGAAAGACAAGATGTATGGATTTTCTGAGAAACTGGGTTGGAGAATGCAAAAGGGTGATGATGGAGCGGTTCAGAAATTCTGCAATGACATTGGTGTTTCAAGAGGGGTTTTCAAGGTTTGGATGCACAATAACAAGAATTTGAGGAAGAAACCAGAATCTGAGGTTGGAATTGCAACTCCAATAAACGACAATAACAATAATCAGAACAACAATGATGGATCCAACAACAATGTCATTCATATGGATGAAGATGGATGTGTCAATGTTCATGTTTCTTCTGTTAATGTTTTATCCTCTTAG 1179 0.4555 MDMTSRNIDVDSQTPPSIPPQPNNNNNNITPTTLKSSPFTNGTHKRHLTTITTTTPPPLQQPPTSPMFVSYKECLKNHAASLGGHALDGCGEFMPSSTVNPNDPRSLKCAACGCHRNFHRREPQEQHLITTTNTTNITTATTNTTANPATNATFLNCIYTPPSTTVPPPQPPPPLQLPHRGPISQSTSPSQSTSPTSSPSPTSSPSSPPPLSHLPPYHHQHSSAPHMLLALGNAYSTPPQSDHDQHQHQNQPHQRNLNFSSSVIKLENPNSNNNSNNSSGARKRYRTKFSKEQKDKMYGFSEKLGWRMQKGDDGAVQKFCNDIGVSRGVFKVWMHNNKNLRKKPESEVGIATPINDNNNNQNNNDGSNNNVIHMDEDGCVNVHVSSVNVLSS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00591 392 MobiDBLite consensus disorder prediction 180 200 - -
Vivi7g00591 392 SUPERFAMILY Homeodomain-like 270 343 IPR009057 -
Vivi7g00591 392 Pfam ZF-HD protein dimerisation region 69 123 IPR006456 -
Vivi7g00591 392 MobiDBLite consensus disorder prediction 162 179 - -
Vivi7g00591 392 MobiDBLite consensus disorder prediction 201 215 - -
Vivi7g00591 392 Gene3D - 267 342 - -
Vivi7g00591 392 MobiDBLite consensus disorder prediction 1 44 - -
Vivi7g00591 392 FunFam Zinc-finger homeodomain protein 2 269 343 - -
Vivi7g00591 392 MobiDBLite consensus disorder prediction 234 283 - -
Vivi7g00591 392 MobiDBLite consensus disorder prediction 23 44 - -
Vivi7g00591 392 MobiDBLite consensus disorder prediction 353 374 - -
Vivi7g00591 392 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 339 - -
Vivi7g00591 392 NCBIfam homeobox domain, ZF-HD class 282 339 IPR006455 -
Vivi7g00591 392 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 71 122 IPR006456 -
Vivi7g00591 392 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 122 IPR006456 -
Vivi7g00591 392 MobiDBLite consensus disorder prediction 160 290 - -
Vivi7g00591 392 MobiDBLite consensus disorder prediction 353 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00591 Vivi-Chr7 36038563 36040046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00591 64 338 ZF-HD Transcription Factor Family AT1G69600 40.288 3.99e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vivi7g00591 ZF-HD_dimer 5.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00591 - - tpra:123899747 385.185