Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00589 ATGAGCGATCATTTGGTGTTGTTTGTGGACCGGCTGGTTCGGCCCATGCCGGTTGAGCCTTTGGCTCAGCACCCGGCGCAGCCTGCTCCTGAGCCGGTGACTCCGGTGAATGAATCGCCGGCTGGGCCTTCCGGTTCTTCGGAGGAGGATGACGATGAGGGCGAGGAGGAGCCGCTGTTGCAGATGGGGGAATGCAGGATTTGTCAGGAGGAGGATAGTATCAATAGTCTGGAGAATCCATGCGGCTGTAGCGGTAGTCTAAAGTATGCTCATAGAAAGTGCGTCCAACGCTGGTGCAACGAAAAGGGAGATACAACCTGTGAAATATGTCATAAGTCCTATGAACCTGGTTATACTGCTCCACCACCTCGTCCACATCCCGAAGAAACAACCATTGATATAGGTGGAGGCTGGACACTTTCTGGCACGCCTTTGGACTTGCGTGATCCTCGACTCTTAGCAATTGCAGAGGCAGAGCGCCAATTCTTTGAAGCTGAATATGATGGATATGCTGCTTCTAATGCCAATGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTAATGGCCCTTTTACTCTTGAGGCACGCACTTTCTGTCACAGATGCTGATGCTGACGATGATCCATCTACTTTTTTCTCTCTTTTCTTGCTTCGAGCAGCTGGATTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATCTTACAACGACGGCGACAAAGACAAGAGGCTGCAGCAGTAGCGGCTACTCAAGTTGCGTTTGTGCTACAATCCGGGCAGCATAGGGGTCTGCAATTCGCCATAGCACCCGCACCAACTGTGAATCCACACCAGGAACAAGTCTAG 852 0.5094 MSDHLVLFVDRLVRPMPVEPLAQHPAQPAPEPVTPVNESPAGPSGSSEEDDDEGEEEPLLQMGECRICQEEDSINSLENPCGCSGSLKYAHRKCVQRWCNEKGDTTCEICHKSYEPGYTAPPPRPHPEETTIDIGGGWTLSGTPLDLRDPRLLAIAEAERQFFEAEYDGYAASNANGAAFCRSAALILMALLLLRHALSVTDADADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAAVAATQVAFVLQSGQHRGLQFAIAPAPTVNPHQEQV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00589 283 MobiDBLite consensus disorder prediction 21 37 - -
Vivi7g00589 283 Pfam Protein of unknown function (DUF3675) 116 234 IPR022143 -
Vivi7g00589 283 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 244 IPR033275 -
Vivi7g00589 283 Pfam RING-variant domain 65 110 IPR011016 GO:0008270
Vivi7g00589 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 119 IPR013083 -
Vivi7g00589 283 ProSiteProfiles Zinc finger RING-CH-type profile. 57 117 IPR011016 GO:0008270
Vivi7g00589 283 FunFam RING/FYVE/PHD zinc finger protein 53 121 - -
Vivi7g00589 283 SMART ringv_2 64 111 IPR011016 GO:0008270
Vivi7g00589 283 CDD RING_CH-C4HC3_MARCH 65 111 - -
Vivi7g00589 283 SUPERFAMILY RING/U-box 64 115 - -
Vivi7g00589 283 MobiDBLite consensus disorder prediction 19 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00589 Vivi-Chr7 35676856 35679669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00589 64 111 C3H Transcription Factor Family AT2G37950 43.137 4.04e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00589 - - ahf:112734090 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g00589 7 35676856 35679669 Vivi7g00589 7 35676856 35679669 ECH