Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00571 ATGGACATGACCTCAAGAAACATAGATGTTGATTCTCAAACACCACCTTCGATTCCTCCACAACCCAACAACACCAACAACAACATAACACCAACAACCTTAAAGTCCTCACCTTTTACCAACGGCACACACAAACGCCACCTTACCACCACTCCACCACCGTTACAACAACCACCAACATCACCCATGTTTGTTTCTTACAAAGAATGTCTCAAAAACCATGCTGCGTCCCTAGGTGGACATGCACTTGATGGATGTGGAGAATTCATGCCTTCATCAACCGTTAATCCAAACGACCCTAGATCCCTCAAATGTGCTGCTTGTGGTTGTCACCGGAACTTCCACCGCCGTGAACCCAAGAACAACTCCATCACCAGCACAAACACCACCAACATCACCACCGCCACAACCAACACCACCGCCAACCCCGCCACCAACGCCACTTTTCTTAACTGCATCTACACTCCCCCGTCAACAACCGTTCCACCACCGCAACCACCACCGCCATTACAACTCCCACACCGTGGCCCGATTAGTCAAAGCACAAGCCCAAGTCAAAGCACAAGCCCAACCTCAAGCCCAAGCCCAACTTCAAGCCCATCCTCTCCACCACCACTCTCACATTTACCACCTTATCATCATCAACACTCTTCAGCGCCTCACATGCTGCTAGCACTTGGAAATGCTTACTCTACACCACCACAATCTGATCATGATCAACATCAACACCAAAATCAACCCCATCAGAGAAATCTCAATTTTTCTTCTTCCGTGATTAAGCTCGAGAACCCGAACAGCAACAACAACAGCAACAACTCGAGCGGTGCGAGAAAGAGGTACAGGACGAAATTCAGCAAGGAGCAGAAAGACAAGATGTATGGATTTTCTGAGAAACTGGGTTGGAGAATGCAAAAGGGTGATGATGGAGCGGTTCAGAAATTCTGCAATGACATTGGTGTTTCAAGAGGGGTTTTCAAGGTTTGGATGCACAATAACAAGAATTTGAGGAAGAAACCAGAATCTGAGGTTGGAATTGCAACTCCAATAAACGACAATAACAATAATCAGAACAACAATGATGGATCCAACAACAATGTCATTCATATGGATGAAGATGGATGTGTTAATGTTCATGTTTCTTCTGTTAATGTTTTATCCTCTTAG 1164 0.4579 MDMTSRNIDVDSQTPPSIPPQPNNTNNNITPTTLKSSPFTNGTHKRHLTTTPPPLQQPPTSPMFVSYKECLKNHAASLGGHALDGCGEFMPSSTVNPNDPRSLKCAACGCHRNFHRREPXKNNSITSTNTTNITTATTNTTANPATNATFLNCIYTPPSTTVPPPQPPPPLQLPHRGPISQSTSPSQSTSPTSSPSPTSSPSSPPPLSHLPPYHHQHSSAPHMLLALGNAYSTPPQSDHDQHQHQNQPHQRNLNFSSSVIKLENPNSNNNSNNSSGARKRYRTKFSKEQKDKMYGFSEKLGWRMQKGDDGAVQKFCNDIGVSRGVFKVWMHNNKNLRKKPESEVGIATPINDNNNNQNNNDGSNNNVIHMDEDGCVNVHVSSVNVLSS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00571 388 MobiDBLite consensus disorder prediction 345 370 - -
Vivi7g00571 388 Gene3D - 263 338 - -
Vivi7g00571 388 MobiDBLite consensus disorder prediction 176 196 - -
Vivi7g00571 388 Pfam ZF-HD protein dimerisation region 65 119 IPR006456 -
Vivi7g00571 388 SUPERFAMILY Homeodomain-like 266 339 IPR009057 -
Vivi7g00571 388 MobiDBLite consensus disorder prediction 120 157 - -
Vivi7g00571 388 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 118 IPR006456 -
Vivi7g00571 388 MobiDBLite consensus disorder prediction 197 211 - -
Vivi7g00571 388 MobiDBLite consensus disorder prediction 158 175 - -
Vivi7g00571 388 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 335 - -
Vivi7g00571 388 MobiDBLite consensus disorder prediction 230 279 - -
Vivi7g00571 388 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 67 118 IPR006456 -
Vivi7g00571 388 MobiDBLite consensus disorder prediction 347 367 - -
Vivi7g00571 388 NCBIfam homeobox domain, ZF-HD class 278 335 IPR006455 -
Vivi7g00571 388 FunFam Zinc-finger homeodomain protein 2 265 339 - -
Vivi7g00571 388 MobiDBLite consensus disorder prediction 119 283 - -
Vivi7g00571 388 MobiDBLite consensus disorder prediction 1 62 - -
Vivi7g00571 388 MobiDBLite consensus disorder prediction 23 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00571 Vivi-Chr7 34015738 34017423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00571 48 334 ZF-HD Transcription Factor Family AT1G69600 39.310 1.78e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vivi7g00571 ZF-HD_dimer 7.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00571 - - tpra:123899747 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g00571 7 34015738 34017423 Vivi7g00571 7 34015738 34017423 ECH
Vivi2g04766 2 166124664 166126028 Vivi7g00571 7 34015738 34017423 PCT