Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00548 ATGGAAGAGAGAAATGGTTGTGAGAAACTTGATGAGGTTATGCTTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAACTTGTTGGATTTTACCTCAAGAGAAAGATTCAACAACGCCCTCTTGCTATTGAGCTCATCAAGCAGCTTGATATTTATAAATTTGATCCTTGGGATCTTCCAAAGTTGGCAAGTACAGGAGAGAAAGAGTGGTATTTTTACTGTCCAAGAGACAGAAAGTACAGGAACAGTGCAAGACCTAATAGGGTAACAAGAGGTGGGTTTTGGAAAGCTACTGGAACAGATAGACCTATTTATTCCTCAGAGGGTTCTAAGTGTATTGGTTTGAAGAAGTCATTGGTTTTCTACAAAGGTAGAGCTGCTAAAGGAGCCAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTCTCATTGACTCATCATCATCATCATCTCCAAAGAAGTATGGAGACAAAACCATTCCTGCTAGTGAATCTTGGGCAATCTGCAGAATATTCAAGAAAACCAATGCAACAGCTCAAAGAGCACTCTCTCACTCATGGGTCCCTCCTTTACTTGAAACATCAACTTCCAATGTTCTAACAAATGATGGAAACCACAACCAATTTTGTTCATCAAACATGATGTTAACAAAGAAACCCACCTATGCAAACCAATTTTGTACTACTAATAACAACAACAACACAACACAAAACTTGACCTCTTCTAGTGGCACAACACTATGTCCTTTAGATGTTCCATCTTATCATAACAATAATCCAATCATTGATCCATTGATTTACAAACCCTTATACCGTTTACCGATTTCGAACGATCAAGACCTTAACCTTAGCACCGGCTTAGTATTCTCTTCTCCTATTGAAACATCTTGTAACAAAACTTCAATGGATGTTTCTTCCTTGCTATTGGGTATGTCATGTGAAGGAACGACCTCAAACTATGTTGACCATTACAATAATGGATATCCATTGATGGCTAATAGTATTCCTAATGTGAATGAGCAAGAGTTGGAGAGAGTGAGATCCATTGGATTCCCATTTAGTGTGCCTTTCAATATTGGTGAAGCATGGAAGTCAAGTCTTGTTTGGGACGTTGCTTCTTGTTCTTCGGATGAACCCTCTAGCTATTCTACTACCAAGTGTTACACTTAG 1173 0.3879 MEERNGCEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLAIELIKQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTRGGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGAKTDWMMHEFRLPSLIDSSSSSSPKKYGDKTIPASESWAICRIFKKTNATAQRALSHSWVPPLLETSTSNVLTNDGNHNQFCSSNMMLTKKPTYANQFCTTNNNNNTTQNLTSSSGTTLCPLDVPSYHNNNPIIDPLIYKPLYRLPISNDQDLNLSTGLVFSSPIETSCNKTSMDVSSLLLGMSCEGTTSNYVDHYNNGYPLMANSIPNVNEQELERVRSIGFPFSVPFNIGEAWKSSLVWDVASCSSDEPSSYSTTKCYT 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00548 390 ProSiteProfiles NAC domain profile. 14 175 IPR003441 GO:0003677|GO:0006355
Vivi7g00548 390 Gene3D NAC domain 23 180 IPR036093 GO:0003677|GO:0006355
Vivi7g00548 390 FunFam NAC domain-containing protein 35 23 178 - -
Vivi7g00548 390 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Vivi7g00548 390 SUPERFAMILY NAC domain 13 175 IPR036093 GO:0003677|GO:0006355
Vivi7g00548 390 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00548 Vivi-Chr7 32955821 32958306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00548 1 266 NAC Transcription Factor Family AT1G26870 60.662 1.18e-107 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi7g00548 NAM 4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00548 - - vra:106768003 481.1