Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00454 ATGGATTTCACATCAAACCTCACTGATCTTCCTCCAAACAAGAGACACAGATTCATTCAACAACAACAACAACAACAACAACCTAGTCCATGTTCACCTCTACCCACCAAAAAACGCAAAGAATCTCGAAATTCATCACTTTTTCACACCCCACCATCAACACCTTCACCCTCTATATATTCTCTACCCACCAAAAAACGAGTCTCCGCCCTTCAACCCCACTTTTACCACCACAACACCACCGCAAATGACGCCGTTATCCACCCACTCATAGATCTCAATGTCGAATACAATCCTGATCTCCACTCACCCATCCTAGCCGACAAAAAACCTCAACAACAACAAAAACAAGACACTGACAACAACAACAACGACAATGATGACAACAACACTGACAAAGAAGTTGTCGCTGAAGAAGATGGGATTTTATGCTGCGTGTGTCAAAGCACCGACGCTAACTCCGAAGACCCAATTGTTTTCTGCGACGGTTGTAACCTAATGGTCCACGCTTCCTGCTACGGAAACCCTCTAGCAAAACAAATCCCAGAGGGTGATTGGTTCTGTGAACAGTGTCGTATTACGGATACGAATACAGATCCAATACGCTGCTGTCTCTGTCCGACTAAAGAAGGTGCCATGAAACAAACGATAGACGGAAAATGGGCTCACGTGGTGTGTGCTCTACTCGTTCCCGAAGTGTATTTTGTTGATCCAGAAGGGAGAGAAAAGATCGATTGTTCCAAGGTTCCGAAAAAGAGATGGTTGGAGAAATGCTATGTTTGTGGGTGCTGTGATGGGTGTGCTTTGGTTTGTTCTGAACCGAAGTGTGGTTTGGGGTTTCATATTACTTGCGGGATTAAAGAGGATGTTTGTATTGAGTATAAGGAAGGGAAGAAAGGGGCTACTGTCGTTGCTGGGTTTTGCAAAACCCATTCTCAAATCTGGGAAAAGAACAAGGGATCTGGGAAATACAAGATTGTTGCAGCTGAAGATAAGTAG 999 0.4424 MDFTSNLTDLPPNKRHRFIQQQQQQQQPSPCSPLPTKKRKESRNSSLFHTPPSTPSPSIYSLPTKKRVSALQPHFYHHNTTANDAVIHPLIDLNVEYNPDLHSPILADKKPQQQQKQDTDNNNNDNDDNNTDKEVVAEEDGILCCVCQSTDANSEDPIVFCDGCNLMVHASCYGNPLAKQIPEGDWFCEQCRITDTNTDPIRCCLCPTKEGAMKQTIDGKWAHVVCALLVPEVYFVDPEGREKIDCSKVPKKRWLEKCYVCGCCDGCALVCSEPKCGLGFHITCGIKEDVCIEYKEGKKGATVVAGFCKTHSQIWEKNKGSGKYKIVAAEDK 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00454 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 314 IPR013083 -
Vivi7g00454 332 ProSiteProfiles Extended PHD (ePHD) domain profile. 200 312 IPR034732 -
Vivi7g00454 332 MobiDBLite consensus disorder prediction 1 61 - -
Vivi7g00454 332 ProSiteProfiles Zinc finger PHD-type profile. 141 194 IPR019787 -
Vivi7g00454 332 SUPERFAMILY FYVE/PHD zinc finger 138 208 IPR011011 -
Vivi7g00454 332 SMART PHD_3 257 312 IPR001965 -
Vivi7g00454 332 SMART PHD_3 143 192 IPR001965 -
Vivi7g00454 332 Pfam PHD-finger 144 192 IPR019787 -
Vivi7g00454 332 Pfam PHD-zinc-finger like domain 202 311 - -
Vivi7g00454 332 MobiDBLite consensus disorder prediction 1 33 - -
Vivi7g00454 332 CDD PHD_BRPF_JADE_like 143 191 - -
Vivi7g00454 332 MobiDBLite consensus disorder prediction 46 61 - -
Vivi7g00454 332 PANTHER PHD FINGER PROTEINS 28 317 - -
Vivi7g00454 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 197 IPR013083 -
Vivi7g00454 332 MobiDBLite consensus disorder prediction 102 132 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00454 20 331 C2H2 Transcription Factor Family AT3G14740 49.226 4.32e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi7g00454 zf-HC5HC2H_2 1.4e-25 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00454 K11380 - gmx:100802652 360.533