Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00425 ATGTATGAAGTGATCCTAACTGGTTCTAGCGACGGTCCCATGATAGCATTTGAGGCTTCCACAGGCGCTATTCTTGCTCAATTCACAGGCAGTCGATCACCTTGTCGTGGCTTCACGGTGACGTGCAAAGAACTCATTGTAACCTCTCATGTGTCTTCAGACAATGGATCAGGCTCAATCCACATCTACAATTGGGATACTTCAACAGTGTTCCATAAGATCCCTCTCCCTGAAGTCGTCACTCCAATTATAGCCAATTCGAGTGGTGATTTTCTCTTTGCAGGTGGAGTGGCGGGGAGTATACATTCCTTGTCACTTCCTTCCGGAGATATCATCAAATCAATTACACCTTACTCGAAACCTGTTTCTAGTCTCCACCTCAATAATGATGGGTCACTACTGATTTCAGGTTACAATGATGGTTCTATTGTTGTAATCCCATCTTTTATGCTTGTTAATGGTTCATCTTCATGTAATGACCCTATCTCACACAAATGGAAGGCACATTCTGATGCAGTGACAAGTTTCAACACTGGAATTGGGATTCATACTTGTACATTTGTTTCATGTTCGATGGACTGCACCTGTAAGTTTTGGAGTTTATCAAATGGGATAACTCTAATTCGAACTGTGACATTTCCGTGTTCTATTTTTGGGTTTATTATGGATTCAACAGAGTCGGGTTTCTATGCTGCTGGTTCAGATGGGTTTATATATAAAGGGTTAATGAAGGTTGGGAGTATAAAAATGTTAGAAAAAAGTTATGAATTGGTTAATTGGGGTAGTAAAACAAAAAACCATGGTGGGTCAATAATGTCCTTAGTTTTGGTGAATAATGGGAGAAATTTGGTGTCTGCTTCAAAAAATGGAAGTGTTTGGATGTGGGATGTTGAGGAAGGTGAAGTCATTATGGTTTTAGGAAATGCTCAAATATTGGGAAGCATTAGTGATATGATAGTGGTCAAAGGGACTAATATTATAGAGAGAAATGAGTGTGGTGAAGGTTCTAATAGTGGCTTAACTAGTTCTTCTAGATTATGTGATGAAGAGATGGTTAGGACTTGGATGAAAATTAGTGAGCTTGAAAATGTGATGGATGAGGCAGTTCATGACCAAGGAAGTGCCATAGATATGCTTGAATCTACAATTGCATCTTATGAGAGGCTATTGAAGCTTATTCTTAGGGAAGTTACCAAAGCCATTGAAGAGGCCGATCATGAAGATGAAGACAATGATAATAAAGGAGAAAAAGATTAA 1257 0.3914 MYEVILTGSSDGPMIAFEASTGAILAQFTGSRSPCRGFTVTCKELIVTSHVSSDNGSGSIHIYNWDTSTVFHKIPLPEVVTPIIANSSGDFLFAGGVAGSIHSLSLPSGDIIKSITPYSKPVSSLHLNNDGSLLISGYNDGSIVVIPSFMLVNGSSSCNDPISHKWKAHSDAVTSFNTGIGIHTCTFVSCSMDCTCKFWSLSNGITLIRTVTFPCSIFGFIMDSTESGFYAAGSDGFIYKGLMKVGSIKMLEKSYELVNWGSKTKNHGGSIMSLVLVNNGRNLVSASKNGSVWMWDVEEGEVIMVLGNAQILGSISDMIVVKGTNIIERNECGEGSNSGLTSSSRLCDEEMVRTWMKISELENVMDEAVHDQGSAIDMLESTIASYERLLKLILREVTKAIEEADHEDEDNDNKGEKD 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00425 418 Coils Coil 376 403 - -
Vivi7g00425 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Vivi7g00425 418 ProSitePatterns Trp-Asp (WD) repeats signature. 283 297 IPR019775 -
Vivi7g00425 418 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 4 301 IPR011047 -
Vivi7g00425 418 PANTHER WD-REPEAT PROTEIN 18 1 364 IPR045227 -
Vivi7g00425 418 SMART WD40_4 159 200 IPR001680 GO:0005515
Vivi7g00425 418 SMART WD40_4 21 64 IPR001680 GO:0005515
Vivi7g00425 418 SMART WD40_4 108 147 IPR001680 GO:0005515
Vivi7g00425 418 SMART WD40_4 254 296 IPR001680 GO:0005515
Vivi7g00425 418 Gene3D - 3 145 IPR015943 GO:0005515
Vivi7g00425 418 Gene3D - 151 318 IPR015943 GO:0005515
Vivi7g00425 418 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 301 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00425 67 299 U-box Gene Family AT1G04510 25.726 2.32e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00425 K14829 - gmx:100785191 426.402