Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00424 ATGGCTTTACTGTGTGGTTCACCATCGGTCTCCTTCCCTTCATCTTCATTCACTTCTCACAAAAACGCAACCGCTAAATCTTCCTTTGTTGGCTCCCAATTGCCTCTTCCAACCCTTTCATTATCATCATCTTCTTCTTCAATTCGTAGCACCCATTTCTCTACATCTTTCGTTGTTCGTTCTCAACTGGATACTTCCGTGGTAGAACAAGATCCACGATTCATCACTGTTGAACCTGAGCCCCGATTCCAAGGCCCGGACATTTGGAACACGACGTGGTATCCAAAAGCTTCGGACCATGTCAACACAGAAAAAACATGGTATATTGTTGATGCTGAAGATAAAATTCTAGGAAGACTAGCATCAACAATTGCCAATTACATTCGAGGCAAAAATCTAGGGACTTTTACACCCAGTGTTGACATGGGTGCATTTGTAATTGTGATAAATGCAGAAAAGGTTGCTGTAAGTGGGAAAAAGAGGACACAAAAGCTTTATCGGAGGCACTCAGGTCGACCTGGTGGTATGACAATTGAGACATTTGATCAGCTGCAGAAAAGAATTCCTGAAAGAATTATTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGGAGGCTTGGCAGGACTCTATTCACACGGCTGAAGGTTTATAGCGGCCCAGATCATCCACATGAGGCGCAGCAGCCGATTGATTTGCCAATTAGGGATAAGAGAATACAGTTGCAGAGATAA 732 0.4358 MALLCGSPSVSFPSSSFTSHKNATAKSSFVGSQLPLPTLSLSSSSSSIRSTHFSTSFVVRSQLDTSVVEQDPRFITVEPEPRFQGPDIWNTTWYPKASDHVNTEKTWYIVDAEDKILGRLASTIANYIRGKNLGTFTPSVDMGAFVIVINAEKVAVSGKKRTQKLYRRHSGRPGGMTIETFDQLQKRIPERIIEHAVRGMLPKGRLGRTLFTRLKVYSGPDHPHEAQQPIDLPIRDKRIQLQR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00424 243 SUPERFAMILY Ribosomal protein L13 102 234 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vivi7g00424 243 CDD Ribosomal_L13 107 220 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vivi7g00424 243 Hamap 50S ribosomal protein L13 [rplM]. 107 242 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vivi7g00424 243 PANTHER RIBOSOMAL PROTEIN L13 93 238 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vivi7g00424 243 ProSitePatterns Ribosomal protein L13 signature. 197 219 IPR023563 GO:0003735|GO:0005840|GO:0006412
Vivi7g00424 243 NCBIfam 50S ribosomal protein L13 101 232 IPR005823 GO:0003735|GO:0005840|GO:0006412
Vivi7g00424 243 Gene3D Ribosomal protein L13 96 239 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vivi7g00424 243 FunFam 50S ribosomal protein L13 91 234 - -
Vivi7g00424 243 Pfam Ribosomal protein L13 105 223 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00424 109 242 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 29.412 4.55e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00424 K02871 - gmx:100305981 335.109