Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00418 ATGAATAAACATTCATTTTTTCATGTCAAATGTAATTGCCTGTTTACGGTGTTTGATTTTGATTTAATATACTTGTTAACAGGACTTTCCGGTATTCGAATAAAAGTTTATACCTACAAAGAACTCAAAAATGCCTCTGACAATTTCAGCCCGGCTAATAAAATCGGGGAGGGTGGTTTTGGTTCTGTCTATAAGGGAGTACTAAAAGGTGGGAAGTTAGCTGCTATTAAAGTTCTTTCAACTGAATCAAAGCAAGGAGTGAAGGAATTCTTGACCGAGATTAATGTCATTTCAGAAATACAGCATGAAAATTTGGTTATACTATATGGTTGTTGCGTGGAAGGAGATCATCGAATATTAGTCTACAATTACCTCGAGAACAATAGTCTTGCACAAACCCTTCTAGCTGGAGGTCACAGTAATATCTACTTCGATTGGCAAACGCGATGTAAGATATGTATTGGAGTTGCACGCGGACTTGCCTTTCTCCATGAAGAAGTAACGCCGCATATTGTTCACAGAGATATAAAAGCAAGCAATATTCTCCTTGACAAAGACCTTACACCTAAGATTTCGGATTTTGGTCTTGCAAAACTTATTCCATCATATATGACTCATGTCAGCACACGCGTAGCAGGAACAATAGGCTATTTGGCACCAGAGTATGCGATAAGGGGGCAGTTGACTCGTAAAGCAGATATTTACAGTTTTGGCGTCCTACTTATAGAGATAGTCAGTGGGAGATCTAACACAAATGTCAGATTACCAGTTGCAGATCAATATATTCTAGAAACGACATGGGAGCTTTACGAGCGAAACGAATTGGTACAGTTGGTAGACATATCACTAAACGGGGGTTTCGATCCTGTGGAGGCTTGTAAAATTCTGAAGATTGCCCTTCTTTGTACTCAGGACACTCCTAAGCTCCGGCCAACCATGTCTTCTGTTGTCAAAATGCTCACCGGAGAAATTGATATTAACGAAAGTAAAATAACAAAACCGGGGTTGATTTCAGATGTTATGGATCTTAAAGTTAGAGGAGCTAAGAAAAATAAAGATATAGAGAGTACATCTTCATACAATGCTTCCTCTGGCTCAGATAGCCAGGGTACTACTACTACTGTGTCATTGGCTGCTTCTTCAAGTACTGCAACAACTTCAACCTTCACTATAAAACATGATAAAAGCATGTAA 1194 0.3886 MNKHSFFHVKCNCLFTVFDFDLIYLLTGLSGIRIKVYTYKELKNASDNFSPANKIGEGGFGSVYKGVLKGGKLAAIKVLSTESKQGVKEFLTEINVISEIQHENLVILYGCCVEGDHRILVYNYLENNSLAQTLLAGGHSNIYFDWQTRCKICIGVARGLAFLHEEVTPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLIEIVSGRSNTNVRLPVADQYILETTWELYERNELVQLVDISLNGGFDPVEACKILKIALLCTQDTPKLRPTMSSVVKMLTGEIDINESKITKPGLISDVMDLKVRGAKKNKDIESTSSYNASSGSDSQGTTTTVSLAASSSTATTSTFTIKHDKSM 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00418 397 Gene3D Transferase(Phosphotransferase) domain 1 125 333 - -
Vivi7g00418 397 CDD STKc_IRAK 55 322 - -
Vivi7g00418 397 Gene3D Phosphorylase Kinase; domain 1 28 124 - -
Vivi7g00418 397 ProSiteProfiles Protein kinase domain profile. 49 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00418 397 FunFam cold-responsive protein kinase 1 27 124 - -
Vivi7g00418 397 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Vivi7g00418 397 SMART serkin_6 49 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00418 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Vivi7g00418 397 SUPERFAMILY Protein kinase-like (PK-like) 32 320 IPR011009 -
Vivi7g00418 397 Pfam Protein kinase domain 52 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00418 397 MobiDBLite consensus disorder prediction 354 397 - -
Vivi7g00418 397 FunFam cold-responsive protein kinase 1 125 336 - -
Vivi7g00418 397 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00418 Vivi-Chr7 23495616 23498531 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00418 37 384 Receptor kinase-like Gene Family AT1G53440 53.161 4.13e-114 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi7g00418 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00418 - - gmx:100800503 556.214