Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00417 ATGACTTGTTTTTCTTTCTTATTTGGTAAGAAAGTGTCTTCTGATATAAGACGAGATCCTGAAATTGACCAAGGACTTTCCGGTATTCGAATAAAAGTTTATACCTACAAAGAACTCAAAAATGCCTCTGACAATTTCAGCCCGGCTAATAAAATCGGGGAGGGTGGTTTTGGTTCTGTCTATAAGGGAGTACTAAAAGGTGGGAAGTTAGCTGCTATTAAAGTTCTTTCAACTGAATCAAAGCAAGGAGTGAAGGAATTCTTGACCGAGATTAATGTCATTTCAGAAATACAGCATGAAAATTTGGTTATACTATATGGTTGTTGCGTGGAAGGAGATCATCGAATATTAGTCTACAATTACCTCGAGAACAATAGTCTTGCACAAACCCTTCTAGCTGGAGGTCACAGTAATATCTACTTCGATTGGCAAACGCGATGTAAGATATGTATTGGAGTTGCACGCGGACTTGCCTTTCTCCATGAAGAAGTAACGCCGCATATTGTTCACAGAGATATAAAAGCAAGCAATATTCTCCTTGACAAAGACCTTACACCTAAGATTTCGGATTTTGGTCTTGCAAAACTTATTCCATCATATATGACTCATGTCAGCACACGCGTAGCAGGAACAATAGGCTATTTGGCACCAGAGTATGCGATAAGGGGGCAGTTGACTCGTAAAGCAGATATTTACAGTTTTGGCGTCCTACTTATAGAGATAGTCAGTGGGAGATCTAACACAAATGTCAGATTACCAGTTGCAGATCAATATATTCTAGAAACGACATGGGAGCTTTACGAGCGAAACGAATTGGTACAGTTGGTAGACATATCACTAAACGGGGGTTTCGATCCTGTGGAGGCTTGTAAAATTCTGAAGATTGCCCTTCTTTGTACTCAGGACACTCCTAAGCTCCGGCCAACCATGTCTTCTGTTGTCAAAATGCTCACCGGAGAAATTGATATTAACGAAAGTAAAATAACAAAACCGGGGTTGATTTCAGATGTTATGGATCTTAAAGTTAGAGGAGCTAAGAAAAATAAAGATATAGAGAGTACATCTTCATACAATGCTTCCTCTGGCTCAGATAGCCAGGGTACTACTACTACTGTGTCATTGGCTGCTTCTTCAAGTACTGCAACAACTTCAACCTTCACTATAAAACATGATAAAAGCATGTAA 1185 0.3941 MTCFSFLFGKKVSSDIRRDPEIDQGLSGIRIKVYTYKELKNASDNFSPANKIGEGGFGSVYKGVLKGGKLAAIKVLSTESKQGVKEFLTEINVISEIQHENLVILYGCCVEGDHRILVYNYLENNSLAQTLLAGGHSNIYFDWQTRCKICIGVARGLAFLHEEVTPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLIEIVSGRSNTNVRLPVADQYILETTWELYERNELVQLVDISLNGGFDPVEACKILKIALLCTQDTPKLRPTMSSVVKMLTGEIDINESKITKPGLISDVMDLKVRGAKKNKDIESTSSYNASSGSDSQGTTTTVSLAASSSTATTSTFTIKHDKSM 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00417 394 Gene3D Phosphorylase Kinase; domain 1 17 121 - -
Vivi7g00417 394 Pfam Protein kinase domain 49 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00417 394 CDD STKc_IRAK 52 319 - -
Vivi7g00417 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vivi7g00417 394 FunFam cold-responsive protein kinase 1 18 121 - -
Vivi7g00417 394 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00417 394 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 359 - -
Vivi7g00417 394 SUPERFAMILY Protein kinase-like (PK-like) 27 317 IPR011009 -
Vivi7g00417 394 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00417 394 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Vivi7g00417 394 MobiDBLite consensus disorder prediction 351 394 - -
Vivi7g00417 394 FunFam cold-responsive protein kinase 1 122 333 - -
Vivi7g00417 394 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00417 Vivi-Chr7 23495180 23498527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00417 21 381 Receptor kinase-like Gene Family AT1G53440 51.781 1.43e-114 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi7g00417 Pkinase 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00417 - - gmx:100800503 581.637