Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00405 ATGCTGACAGACGCAGAAGAACGCGAATCCTTCAATTCCGTGTTGGGACGCATCTTACTATGCAAAATCTGTGGTCGTAATCGAAGGCATCAAAGGCTCGAGAAATCTTTCACTTACAGCAACTTCATACATGAAATCCAACCGTTTGATTATGATAATATGGAGTTTCTTAAAATTCTCGGTGAAGGAAGTTACGGTAGGGTTTCTCAATTCCGTATCGTCAATGATAACAGCATTGTGGCCGTTAAACAAATCTCGATTGCCAACACTTCCGATGCTGTTCCTGGTTTCATCATCAGAGAGGTCTCCTTTCTAAAAGAATTGAATCATCCAAACATTGTTAGGTTATTGAATGTAACGAACAATAAGGATACAAATGTGGTGAGCCTTGTTTTCGAGTGTCTTGATTGCGATCTTGACAAGTACATTAAAGAGAAAGATCGCTACGGTTCAGCTATTAATAATCCCTTCACAAGAAAGAGTTTTCTGTATCAAATATTATCTGCTGTGGAGTACTGTCATTCTCATCAGATTATGCACAGAGACTTGAAACCGCGTAATCTTCTAATCGATCATTCTAAAAAGATAATCAAACTTGCTGATTTTGGTTGGGCTAGAGAGTTGGGAGATCCAGAAAAGTTCTATACTGATAAGATAGCAACTCGGTGGTATAGGGCACCTGAAGTTCTGTTTCTTAACGGTCAATACTCAACTCCAATGGATATTTGGGCTGTGGGCTGTATATTTGGTGAGATGGTACTTGGACAGCCAATACACAATGTTTTTAATTGCACTGGTGAGCTACAGCTGATTTTCAGAATGTTTGGTACACCAACAGAGGAAACGTGGCCAGGGGTCACTAAATTATGTACCAACCTTCAAGCCTATACCAAATCTGACCCAATGGACCTTTCAACAATTTTTCATGATCTTGATCCAACTGGTCTTAATCTTCTAACGAGGATGCTTTGCCTGGACCCAAACAAGAGGATTTCAGCGGAAGCTGCTCTAAAGCATGCTTACTTTAATGACTTGGATCAGGAGCAGTCAGTCAAAAAAAATATTGGGATAATAAGGGAGGGTGGTGGCAACAACAATAACCCAGAAGAGTTTGCGGTGATGAGGGAGGGTGGGAGTAGCACCAACAAAGGGGAAGTGTTTGCAATGACGATGAAGGGTGGCAGCAGCACCAACAATGCAAAAGAGATTGCCATGACGAGGGAGGGTGGCAGCACCCCCACTAACAACAATAACCCAGAAGAGTTTGCGATGGTGAGGGAGGGTGGCAGCACCACCTCTAGCAACAATAACCCAGAAGAGTTTGCGATGGCGAGGGAGGGTGGGAGTAGCACCACCAGAAACAACAATGTAGAAGAATTTCCGATGACCGTGGAAGGTGAAAGCAGCACCACCATGAACAACAATGAAGAAGAGTTTGCGGTGGGGTGTTTGCTGTCGATCAGGACAGTATTTGGTGAAGAGTTTGAAGGCCAAGTTGTTACGTTTGATCGTCCCTCCAACATCCTCGCACTCATGGAAAGTTCCAAAGATGTCCCTCTTGGAAAAATTAGGATTTTGAAAGCTGATTACATAGAAGACTTCACCTTATTAGGTCAATATAAAGACCCACTTTATCCATATAAGTGCTACCTTGATCTCAATGTTCTCCAAGCAAGGGAAAAAGTTGCCATTAGACAAGCAGAAGCAGATGCTGAGAGGATTGGGGTTGGTGTTACAAGTGTAGCACAGAACATCTTTGATGCTTTATCTAAAACGCATCCAGTCCGCTGGGACAAGACTGTCATAGTTGTGATGAATGAGGTGCGTATCAGCAGTCCTTATCACTCGGAATGTGTGATTGGCGGTACTCAAGTTGCAAATAACCGTATGAAAAAAGTGCTTGAGATGTTGTGGAAGTGGTTGCAACTTCCAGGTTCTGGTGATCTTTGTTGA 1953 0.4286 MLTDAEERESFNSVLGRILLCKICGRNRRHQRLEKSFTYSNFIHEIQPFDYDNMEFLKILGEGSYGRVSQFRIVNDNSIVAVKQISIANTSDAVPGFIIREVSFLKELNHPNIVRLLNVTNNKDTNVVSLVFECLDCDLDKYIKEKDRYGSAINNPFTRKSFLYQILSAVEYCHSHQIMHRDLKPRNLLIDHSKKIIKLADFGWARELGDPEKFYTDKIATRWYRAPEVLFLNGQYSTPMDIWAVGCIFGEMVLGQPIHNVFNCTGELQLIFRMFGTPTEETWPGVTKLCTNLQAYTKSDPMDLSTIFHDLDPTGLNLLTRMLCLDPNKRISAEAALKHAYFNDLDQEQSVKKNIGIIREGGGNNNNPEEFAVMREGGSSTNKGEVFAMTMKGGSSTNNAKEIAMTREGGSTPTNNNNPEEFAMVREGGSTTSSNNNPEEFAMAREGGSSTTRNNNVEEFPMTVEGESSTTMNNNEEEFAVGCLLSIRTVFGEEFEGQVVTFDRPSNILALMESSKDVPLGKIRILKADYIEDFTLLGQYKDPLYPYKCYLDLNVLQAREKVAIRQAEADAERIGVGVTSVAQNIFDALSKTHPVRWDKTVIVVMNEVRISSPYHSECVIGGTQVANNRMKKVLEMLWKWLQLPGSGDLC 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00405 650 PANTHER CELL DIVISION PROTEIN KINASE 53 342 - -
Vivi7g00405 650 Pfam Anticodon-binding domain 551 633 IPR019181 -
Vivi7g00405 650 FunFam Mitogen-activated protein kinase 100 353 - -
Vivi7g00405 650 MobiDBLite consensus disorder prediction 426 456 - -
Vivi7g00405 650 ProSiteProfiles Protein kinase domain profile. 54 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00405 650 Gene3D Phosphorylase Kinase; domain 1 55 134 - -
Vivi7g00405 650 Gene3D Transferase(Phosphotransferase) domain 1 135 351 - -
Vivi7g00405 650 Pfam Protein kinase domain 55 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00405 650 SMART serkin_6 54 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00405 650 SUPERFAMILY Protein kinase-like (PK-like) 50 346 IPR011009 -
Vivi7g00405 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Vivi7g00405 650 SMART AD_2 547 633 IPR019181 -
Vivi7g00405 650 CDD STKc_CDK_like 55 342 - -
Vivi7g00405 650 ProSiteProfiles AD domain profile. 549 642 IPR047574 -
Vivi7g00405 650 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Vivi7g00405 650 MobiDBLite consensus disorder prediction 426 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00405 Vivi-Chr7 23165656 23169538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00405 52 345 Core Cell Cycle Gene Families AT3G48750 45.918 1.02e-86 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vivi7g00405 Pkinase 1.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00405 K02206 - vvo:131617029 1295.41