Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00402 ATGACTTGTTTTTCTTTCTTATTTGGTAAGAAAGTGTCTTCTGATATAAGACGAGATCCTGAAATTGATCAAGGACTTTCCGGTATTCGAATAAAAGTTTATACCTACAAAGAACTCAAAAATGCCTCTGACAATTTCAGTCCGGCTAATAAAATCGGAGAGGGTGGTTTTGGTTCTGTCTATAAGGGAGTACTAAAAGGTGGGAAGTTAGCTGCTATTAAAGTTCTTTCAACTGAATCAAAGCAAGGAGTGAAGGAATTCTTGACCGAGATTAATGTCATTTCAGAAATACAGCATGAAAATTTGGTTATACTATATGGTTGTTGCGTGGAAGGAGATCACCGAATATTAGTCTACAATTACCTCGAGAACAATAGCCTTGCACAAACCCTTCTAGCTGGAGGTCACAGTAATATCTACTTCGATTGGCAAACGCGATGTAAGATATGTATTGGAGTTGCACGCGGACTTGCCTTTCTCCATGAAGAAGTAACGCCGCATATTGTTCACAGAGATATAAAAGCAAGCAATATTCTCCTTGACAAAGACCTTATACCTAAGATTTCGGATTTTGGTCTTGCAAAGCTTATTCCATCATATATGACTCATGTCAGCACACGCGTAGCAGGAACAATAGGCTATTTGGCACCAGAGTATGCGATAAGGGGGCAGTTGACTCGTAAAGCAGATATTTACAGTTTTGGCGTCCTACTTATAGAGATAGTCAGTGGGAGATCTAACACAAATGTCAGATTACCAGTTGCAGATCAATATATTCTAGAAACGACATGGGAGCTTTACGAGCGAAACGAATTGGTACAGTTGGTAGACATATCACTAAACGGGGGTTTCGATCCTGTGGAGGCTTGTAAAATTCTGAAGATTGCCCTTCTTTGTACTCAGGACACTCCTAAGCTCCGGCCAACCATGTCTTCTGTTGTCAAAATGCTCACCGGAGAAATTGATATTAACGAAAGTAAAATAACAAAACCGGGGTTGATTTCAGATGTTATGGATCTTAAAGTTAGAGGAGCTAAGAAAAATAAAGATATAGAGAGTACATCTTCATACAATGCTTCCTCTGGCTCAGATAGCCAGGGTACTACTACTACTACTGTGTCATTGGCTGCTTCTTCAAGTACTGCAACAACTTCAACCTTCACTATAAAACATGATAAAAGCATGTAA 1188 0.3931 MTCFSFLFGKKVSSDIRRDPEIDQGLSGIRIKVYTYKELKNASDNFSPANKIGEGGFGSVYKGVLKGGKLAAIKVLSTESKQGVKEFLTEINVISEIQHENLVILYGCCVEGDHRILVYNYLENNSLAQTLLAGGHSNIYFDWQTRCKICIGVARGLAFLHEEVTPHIVHRDIKASNILLDKDLIPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLIEIVSGRSNTNVRLPVADQYILETTWELYERNELVQLVDISLNGGFDPVEACKILKIALLCTQDTPKLRPTMSSVVKMLTGEIDINESKITKPGLISDVMDLKVRGAKKNKDIESTSSYNASSGSDSQGTTTTTVSLAASSSTATTSTFTIKHDKSM 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00402 395 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 359 - -
Vivi7g00402 395 CDD STKc_IRAK 52 319 - -
Vivi7g00402 395 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00402 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vivi7g00402 395 MobiDBLite consensus disorder prediction 351 395 - -
Vivi7g00402 395 Gene3D Phosphorylase Kinase; domain 1 17 121 - -
Vivi7g00402 395 FunFam cold-responsive protein kinase 1 122 333 - -
Vivi7g00402 395 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Vivi7g00402 395 Pfam Protein tyrosine and serine/threonine kinase 50 317 IPR001245 GO:0004672|GO:0006468
Vivi7g00402 395 FunFam cold-responsive protein kinase 1 18 121 - -
Vivi7g00402 395 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00402 395 SUPERFAMILY Protein kinase-like (PK-like) 27 317 IPR011009 -
Vivi7g00402 395 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00402 Vivi-Chr7 23136371 23139537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00402 21 381 Receptor kinase-like Gene Family AT1G53440 52.055 3.61e-114 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi7g00402 PK_Tyr_Ser-Thr 4.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00402 - - lja:Lj3g3v0422690.3 575.474