Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00380 ATGTTGATTCTCATATTTGACAGTGGTAAATTTGATTCATCGATCAATTGGAGCACTGGAGTTACTCTCATGACTTGTTGCTCTCATCTTTTCAGAAAAATTAAGTCTTCCTCAGCCACAGGATTTGCTGGAACAGATATAGATGTTTCAGAACTTCACAATGTCAAAATTTACACTTACAAGGAACTGCGAATCGCCACTACAGGGTTTAGCCTTGCAAACAAGATAGGGCAGGGAGGTTTTGGATCTGTCTATAAGGGAAAGTTGAGAGATGGTTGTTTGGTAGCTATAAAGGTTTTATCAGCTGAATCAAAACAAGGAGTCCATGAGTTTTTGACAGAAATCAAGGTGATTTCTAGTATAGAACATGAAAATTTAGTGAAGTTGTATGGATGCTGTGTGGAAGACAATCATAGGATTTTGGTATATGGCTATCTTGAGAACAACAGCCTAGCACAAACACTTCTTGGTCACAGTAACATCAAATTCAGTTGGGATGTAAGGCGCAACATTTGCGTAGGTGTTGCTAGAGGGCTTGCATTCCTTCATGGAGAGGTTCGGCCACATATCATTCATAGAGATATTAAAGCCAGCAATGTGTTGCTTGACACAGATCTCCGACCCAAAATTTCTGATTTTGGCCTTGCAAAGCTCATTTCTCCAAACTTGACCCATATTAGTACAAGGGTTGCTGGAACTGCTGGTTATGTGGCACCTGAGTATGCAATACGAAATCAAGTGACAAGAAAATCGGACATCTATAGTTTTGGAGTGTTACTGTTAGAAATTGTTAGTGGGAGGCCCAACACAAACAGACGTTTACCTGTAAAAGAACAATATCTTCTTACAAGGGCATGGGATTTGTATGAGAAAGGGGAGCTTAAAACTTTGGTTGATTCTTTTCTTGAGGAGGACTTCAGTGTTGAGGAGGCACTCAAATTTTGCAAGATTGGTCTTCTTTGCACACAGGATTCTCCTCAGCTCCGGCCTTCTATGTCCACTGTGCTTAAAATGCTTATGGGTGAAAAAGATGTGAATGAGGATAATATAATAAAACCAGGCATAATATTTGAATTTGTAGATGCCATTGACCAAGAGGATAAAAAATGCAAAGCTGAAGTGAAAAGTACATCTACTTCTTTGTTGGCTAGTTCAGGAAAGCAAGATGATTCATCTTCATCAGAAACTGTTACCTCTTTTGCTACCATGTCTTTCACTGCTATTTGTGATCGAACCAATTAA 1242 0.3921 MLILIFDSGKFDSSINWSTGVTLMTCCSHLFRKIKSSSATGFAGTDIDVSELHNVKIYTYKELRIATTGFSLANKIGQGGFGSVYKGKLRDGCLVAIKVLSAESKQGVHEFLTEIKVISSIEHENLVKLYGCCVEDNHRILVYGYLENNSLAQTLLGHSNIKFSWDVRRNICVGVARGLAFLHGEVRPHIIHRDIKASNVLLDTDLRPKISDFGLAKLISPNLTHISTRVAGTAGYVAPEYAIRNQVTRKSDIYSFGVLLLEIVSGRPNTNRRLPVKEQYLLTRAWDLYEKGELKTLVDSFLEEDFSVEEALKFCKIGLLCTQDSPQLRPSMSTVLKMLMGEKDVNEDNIIKPGIIFEFVDAIDQEDKKCKAEVKSTSTSLLASSGKQDDSSSSETVTSFATMSFTAICDRTN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00380 413 SMART serkin_6 70 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00380 413 Gene3D Phosphorylase Kinase; domain 1 44 145 - -
Vivi7g00380 413 Gene3D Transferase(Phosphotransferase) domain 1 146 354 - -
Vivi7g00380 413 FunFam cold-responsive protein kinase 1 42 145 - -
Vivi7g00380 413 CDD STKc_IRAK 76 341 - -
Vivi7g00380 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Vivi7g00380 413 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 36 372 - -
Vivi7g00380 413 FunFam Putative LRR receptor-like serine/threonine-protein kinase 146 351 - -
Vivi7g00380 413 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524
Vivi7g00380 413 Pfam Protein kinase domain 72 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00380 413 ProSiteProfiles Protein kinase domain profile. 70 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00380 413 SUPERFAMILY Protein kinase-like (PK-like) 48 340 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00380 Vivi-Chr7 22156375 22158921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00380 58 383 Receptor kinase-like Gene Family AT1G56120 52.439 6.78e-107 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi7g00380 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00380 - - gmx:100801735 629.017