Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00377 ATGACTTGTTGCTCTCATCTTTTCAGAAAAATTAAGTCTTCCTCAGCCACAGGATTTGCTGGAACAGATATAGATGTTTCAGAACTTCACAATGTCAAAATTTACACTTACAAGGAACTGCGAATCGCCACTACAGGGTTTAGCCTTGCAAACAAGATAGGGCAGGGAGGTTTTGGATCTGTCTATAAGGGAAAGTTGAGAGATGGTTGTTTGGTAGCTATAAAGGTTTTATCAGCTGAATCAAAACAAGGAGTCCATGAGTTTTTGACAGAAATCAAGGTGATTTCTAGTATAGAACATGAAAATTTAGTGAAGTTGTATGGATGCTGTGTGGAAGACAATCATAGGATTTTGGTATATGGCTATCTTGAGAACAACAGCCTAGCACAAACACTTCTTGGTCACAGTAACATCAAATTCAGTTGGGATGTAAGGCGCAACATTTGCGTAGGTGTTGCTAGAGGGCTTGCATTCCTTCATGGAGAGGTTCGGCCACATATCATTCATAGAGATATTAAAGCCAGCAATGTGTTGCTTGACACAGATCTCCGACCCAAAATTTCTGATTTTGGCCTTGCAAAGCTCATTTCTCCAAACTTGACCCATATTAGTACAAGGGTTGCTGGAACTGCTGGTTATGTGGCACCTGAGTATGCAATACGAAATCAAGTGACAAGAAAATCGGACATCTATAGTTTTGGAGTGTTACTGTTAGAAATTGTTAGTGGGAGGCCCAACACAAACAGACGTTTACCTGTAAAAGAACAATATCTTCTTACAAGGGCATGGGATTTGTATGAGAAAGGGGAGCTTAAAACTTTGGTTGATTCTTTTCTTGAGGAGGACTTCAGTGTTGAGGAGGCACTCAAATTTTGCAAGATTGGTCTTCTTTGCACACAGGATTCTCCTCAGCTCCGGCCTTCTATGTCCACTGTGCTTAAAATGCTTATGGGTGAAAAAGATGTGAATGAGGATAATATAATAAAACCAGGCATAATATTTGAATTTGTAGATGCCATTGACCAAGAGGATAAAAAATGCAAAGCTGAAGTGAAAAGTACATCTACTTCTTTGTTGGCTAGTTCAGGAAAGCAAGATGATTCATCTTCATCAGAAACTGTTACCTCTTTTGCTACCATGTCTTTCACTGCTATTTGTGATCGAACCAATTAA 1173 0.3939 MTCCSHLFRKIKSSSATGFAGTDIDVSELHNVKIYTYKELRIATTGFSLANKIGQGGFGSVYKGKLRDGCLVAIKVLSAESKQGVHEFLTEIKVISSIEHENLVKLYGCCVEDNHRILVYGYLENNSLAQTLLGHSNIKFSWDVRRNICVGVARGLAFLHGEVRPHIIHRDIKASNVLLDTDLRPKISDFGLAKLISPNLTHISTRVAGTAGYVAPEYAIRNQVTRKSDIYSFGVLLLEIVSGRPNTNRRLPVKEQYLLTRAWDLYEKGELKTLVDSFLEEDFSVEEALKFCKIGLLCTQDSPQLRPSMSTVLKMLMGEKDVNEDNIIKPGIIFEFVDAIDQEDKKCKAEVKSTSTSLLASSGKQDDSSSSETVTSFATMSFTAICDRTN 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00377 390 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 349 - -
Vivi7g00377 390 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 328 - -
Vivi7g00377 390 SMART serkin_6 47 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00377 390 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
Vivi7g00377 390 Gene3D Phosphorylase Kinase; domain 1 21 122 - -
Vivi7g00377 390 FunFam cold-responsive protein kinase 1 19 122 - -
Vivi7g00377 390 ProSiteProfiles Protein kinase domain profile. 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00377 390 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vivi7g00377 390 CDD STKc_IRAK 53 318 - -
Vivi7g00377 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vivi7g00377 390 SUPERFAMILY Protein kinase-like (PK-like) 25 317 IPR011009 -
Vivi7g00377 390 Pfam Protein kinase domain 49 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00377 Vivi-Chr7 22156375 22159213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00377 35 360 Receptor kinase-like Gene Family AT1G56120 52.439 3.07e-107 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi7g00377 Pkinase 8.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00377 - - gmx:100801735 616.69