Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00348 ATGGGAGAAGCAACACAATCAGCAGAAACAGCAACCCCGACAACAAAAACAAAAACAGCAGGAACCTCTTCAAAGAGAACCGGTGGAGGTGGAGAAATCGTGGAGGTGGAAGGAGGTCACATTGTCCGCTCAACAGGCCGAAAAGACCGTCATAGCAAAGTCTGCACCGCGAAAGGTCCCCGTGACCGCCGTGTACGACTCTCCGCACACACCGCGATCCAATTCTACGACGTGCAGGACCGCTTGGGCTACGACCGGCCTAGTAAAGCAGTCGATTGGCTTATCAAAAAAGCAAAGTCCGCCATCGACGAACTCGCTCAACTTCCGGCATGGAACCCCACCGCAACCTGCTCCTCAACGCCACAACAGCAGCAGCAAACTAACGAGTTGTACCGCCGGCAGTCCCCGGTGGACAACAGTCCAGTAACCGCCTCCACCAGTCACCACCGCTCAGCGGCATTAGAGCGAAGAATACCGCAGGAACAATTTTCTTCCCAGCCATTAGAGATAGATTATAACAACAGTAGCGGGAAGCATGGTTTTCTTCATGGCTCATTGGATACTGACATTGCGGATACTATTAAATCCTTTTTTCCAGTTGAAACGCCCACGACGTCGTTTCACAGCTACCCACAACCGCCGGATTTGCTCTCCCGAACGGCCGCAACCACTCAGCAAGATCTGCGCCTCTCTTTGCAATCTTTTCAAGATCCTATTATGCTTCACCATCAAACTCAAAACCACAATGACCACCACCACAATCACCAAGTACTTTACGCCGGAAACTCCTCACTCGGTTTCGACGGTGGTGGAACCAACAACATGTGGTCTGAGCAGCAGCAGCATCAAGAGGAACATGACCATAGCAGATTGCATAGAATGATGGCTTGGAATGCTAATGCTAATGTTAATGCTGCAGATGGTGGTAACAGTGGCCATGGCGCTGGATTTGTGTTCAGCACACCTGCGCCGGCTTTCGGCGGTTTTGGCCAGCTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACAATCCTTCAGTTCGTGCTTGGATAGATCCATCCATGGTGGCGACGGCGAATATGACCGATCACCACCATCACTATCTTTCGCCGATGATCCATCAGGCTTCTGCCTCAGGTGGTGGATTCTCCGGCTTTCGTATACCAACACGAATTCAAGGTGGCGAGGAACACGACGGCGTATCTGATAAACCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1245 0.5157 MGEATQSAETATPTTKTKTAGTSSKRTGGGGEIVEVEGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAQLPAWNPTATCSSTPQQQQQTNELYRRQSPVDNSPVTASTSHHRSAALERRIPQEQFSSQPLEIDYNNSSGKHGFLHGSLDTDIADTIKSFFPVETPTTSFHSYPQPPDLLSRTAATTQQDLRLSLQSFQDPIMLHHQTQNHNDHHHNHQVLYAGNSSLGFDGGGTNNMWSEQQQHQEEHDHSRLHRMMAWNANANVNAADGGNSGHGAGFVFSTPAPAFGGFGQLFSQRGPLQSSNNPSVRAWIDPSMVATANMTDHHHHYLSPMIHQASASGGGFSGFRIPTRIQGGEEHDGVSDKPSSASSDSRH 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00348 414 MobiDBLite consensus disorder prediction 114 149 - -
Vivi7g00348 414 MobiDBLite consensus disorder prediction 1 26 - -
Vivi7g00348 414 MobiDBLite consensus disorder prediction 114 166 - -
Vivi7g00348 414 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 341 IPR005333 GO:0003700
Vivi7g00348 414 MobiDBLite consensus disorder prediction 43 62 - -
Vivi7g00348 414 MobiDBLite consensus disorder prediction 392 414 - -
Vivi7g00348 414 MobiDBLite consensus disorder prediction 380 414 - -
Vivi7g00348 414 MobiDBLite consensus disorder prediction 1 32 - -
Vivi7g00348 414 ProSiteProfiles TCP domain profile. 47 105 IPR017887 -
Vivi7g00348 414 Pfam TCP family transcription factor 46 152 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00348 Vivi-Chr7 20683668 20686908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00348 13 414 TCP Transcription Factor Family AT1G53230 46.919 2.96e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi7g00348 TCP 6.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00348 - - mtr:25502512 570.466