Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi7g00343 | ATGACCGGCGGCAAAGAAATCCTCCATAAGATGAAGGAAAAAGTTTTGGGACCATCTGATCCAGATTCAGGGAAAGGAAAGAGCAAGATGTCAAAGCATGTAACTCATGGCTTTCACTTGGTAAAGGGAACATCAAACCATCCCATGGAAGACTACCTGGTTGCTGAATTCAAACATGTTGATGACAATGAGTTGGGTTTATTTGCAATATTTGATGGTCATGCAGGTCACACTGTCCCTGATTACTTGCGTTCTCATTTATTCGATAATATCATAAATGAGCCTGATTTTTGGACTGAGCCTGCGGATAGTGTGAAGAGAGCATATAGCGAAACGGATTCAACTATTTTAGAGAAATCAGGTGAATTGGGCAGAGGAGGTTCAACTGCAGTTACAGCAATACTGATCAACTGTCAGAAGCTGGTAGTGGCTAATATTGGTGATTCTCGGGCTGTCTTATGCGAGAATGGAGTTGCTATACCACTCTCAGTGGATCATGAACCAACAACAGAAAGGGATGATATCAAAAATAGAGGTGGTTTTGTATCTAACTTCCCAGGGGATGTTGCACGCGTTGATGGCCAGTTAGCAGTGTCTAGGGCATTTGGCGACAAAAGTCTTAAGATACACATGACCTCAGAGCCACATGTGACGGTGAAGATGATAGATGATGGTGGAGAGTTTGTTATATTAGCCAGTGATGGGTTATGGAAGGTCATGTCAAATCAAGAAGCAGTTGATGCTATCAAAGATATCAAGGATGCCCGGGCTGCAGCAAAGCACCTTACTGAAGAAGCGCTTAACAGGAGAAGCTCCGATGATATCTCTTGCATTGTTGTGAGGTTTCACTGA | 852 | 0.4308 | MTGGKEILHKMKEKVLGPSDPDSGKGKSKMSKHVTHGFHLVKGTSNHPMEDYLVAEFKHVDDNELGLFAIFDGHAGHTVPDYLRSHLFDNIINEPDFWTEPADSVKRAYSETDSTILEKSGELGRGGSTAVTAILINCQKLVVANIGDSRAVLCENGVAIPLSVDHEPTTERDDIKNRGGFVSNFPGDVARVDGQLAVSRAFGDKSLKIHMTSEPHVTVKMIDDGGEFVILASDGLWKVMSNQEAVDAIKDIKDARAAAKHLTEEALNRRSSDDISCIVVRFH | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi7g00343 | 283 | SUPERFAMILY | PP2C-like | 31 | 283 | IPR036457 | - | |
| Vivi7g00343 | 283 | ProSitePatterns | PPM-type phosphatase domain signature. | 67 | 75 | IPR000222 | GO:0043169 | |
| Vivi7g00343 | 283 | Pfam | Protein phosphatase 2C | 46 | 275 | IPR001932 | - | |
| Vivi7g00343 | 283 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Vivi7g00343 | 283 | Gene3D | - | 29 | 283 | IPR036457 | - | |
| Vivi7g00343 | 283 | SMART | PP2C_4 | 31 | 280 | IPR001932 | - | |
| Vivi7g00343 | 283 | MobiDBLite | consensus disorder prediction | 6 | 29 | - | - | |
| Vivi7g00343 | 283 | FunFam | Probable protein phosphatase 2C 39 | 25 | 283 | - | - | |
| Vivi7g00343 | 283 | ProSiteProfiles | PPM-type phosphatase domain profile. | 35 | 282 | IPR001932 | - | |
| Vivi7g00343 | 283 | CDD | PP2Cc | 42 | 282 | IPR001932 | - | |
| Vivi7g00343 | 283 | PANTHER | PROTEIN PHOSPHATASE | 30 | 282 | IPR015655 | GO:0004722|GO:0006470 | |
| Vivi7g00343 | 283 | Coils | Coil | 245 | 265 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi7g00343 | Vivi-Chr7 | 20362808 | 20364631 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi7g00343 | 4 | 283 | PP2C-type Phosphatase Gene Family | AT3G15260 | 73.519 | 3.16e-158 | 440 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi7g00343 | K17506 | - | gmx:100787942 | 468.003 |