Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00342 ATGGAAGCTAGGAGTGTTGAAAGGAAGAGAACAATGATGATGGAAAAGGTGAGAAGGAACAACGCAGTTGAAGAAGAAGCGGAAAATGAAGTAGAAGAGGAGGATAGTCTAACTGAAGAAGAGAAGAAAAAAGGAGTTGGTGGTGGGAGAAGAGGAGGTGGTGGAGGTGTTTCTCCACCTTCCTGCCAGGCAGAGAGGTGCGGAGCTGATTTGACAGATGCAAAGAAATACCATCGCCGCCATAAGGTGTGTGAATTTCATTCCAAGTCACCTGTCGTGATGGTTGCAGGGCTAAGGCAGAGGTTTTGCCAACAATGTAGCAGGTTCCATGACTTGGTAGAGTTTGATGAATCGAAAAGAAGCTGCCGCAGGCGATTGGCAGGACACAATGAGCGACGCCGGAAAACCAACCCGGAAGGGGCGAGTGAGGGAAGCAGCCACAGCAAAGGACAACATCAAACTAAGGAAACACAGTGTAGGATTCAGATGAACTTACCAGGAAGTTCTGGCTACAAGTCATTCAATATCAGGTGA 534 0.4775 MEARSVERKRTMMMEKVRRNNAVEEEAENEVEEEDSLTEEEKKKGVGGGRRGGGGGVSPPSCQAERCGADLTDAKKYHRRHKVCEFHSKSPVVMVAGLRQRFCQQCSRFHDLVEFDESKRSCRRRLAGHNERRRKTNPEGASEGSSHSKGQHQTKETQCRIQMNLPGSSGYKSFNIR 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00342 177 MobiDBLite consensus disorder prediction 126 177 - -
Vivi7g00342 177 MobiDBLite consensus disorder prediction 155 177 - -
Vivi7g00342 177 Coils Coil 13 44 - -
Vivi7g00342 177 MobiDBLite consensus disorder prediction 1 65 - -
Vivi7g00342 177 FunFam Squamosa promoter-binding-like protein 14 54 123 - -
Vivi7g00342 177 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 146 IPR044817 GO:0003677
Vivi7g00342 177 MobiDBLite consensus disorder prediction 1 25 - -
Vivi7g00342 177 Pfam SBP domain 62 135 IPR004333 GO:0003677
Vivi7g00342 177 Gene3D - 53 123 IPR036893 GO:0003677|GO:0005634
Vivi7g00342 177 ProSiteProfiles Zinc finger SBP-type profile. 59 136 IPR004333 GO:0003677
Vivi7g00342 177 SUPERFAMILY SBT domain 60 139 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00342 Vivi-Chr7 20360860 20362314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00342 1 177 SBP-box Gene Family AT3G15270 47.253 3.50e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi7g00342 SBP 3.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00342 - - vvo:131620364 295.819