Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00318 ATGGCACCTTTTATACTGACAGTGTCGCAAGATGGAACTGGAAACTACAGAACGGTACAAGAAGCCATTGATGCAGTGCCACTCCGCAACACTTGCCGAACGGTGATAAGGATATCGCCGGGAATCTACCGGCAGCCACTATATGTTCCAAAAACTAAGAACTTCATCACTTTCGTTGGTTTGTTTCCTGGCGATATTGTTCTGACATGGAACAACACTGCCAATAAAATTGATCACCATCAAGGTTCTAAGGTGATAGGGAATGGGACTTTTGGTTGTGGAAGTACTATCGTGGAAGGAGAAGATTTTATTGCTGAGAATATTACGTTTGAAAATTCTTCTCCTGAGGGTTCAGGACAAGCGGTGGCAGTTAGAATAACAGCCGATCGATGTGCATTCTATGATTGCAGGTTCCTTGGATGGCAGGACACACTGTATTTACATTATGGTAAACTATATCTGAGAGATTGTTATATTGAAGGAAGTGTGGACTTTATTTTTGGCAATAGCACTGCACTCTTGGAGCATTGTCATATTCATTGCAAGTCTGCGGGATTCATAACTGCACAAAGTAGGAAATCTCCACATGAAAAAACTGGTTTTGTATTCCTGAGATGTGTTATTACGGGAAATGGAGGAAGTTCATATACATATCTTGGAAGGCCATGGGGACCTTATGGAAGAGTGGTGTTTGCATTTACTTATATGGATCAATGTATAAAACATGTTGGCTGGAATAATTGGGGGAATGTTGAAAATGAAACAAGTGCTTGCTTCTATGAATACAGGTGTTTTGGATTGGGTTTTGTTCCATCGAAACGTGTGAAGTGGGCTAAGATGTTAAAGGATAAAGAAGTTGATCAGTTTCTGATGCATAGCTTCATTGATCCAGAACCACAAAAACCTTGGCTAGCTCAAAAAATGGCTTTCAGGATTCCATATTCTGCTTAG 951 0.4059 MAPFILTVSQDGTGNYRTVQEAIDAVPLRNTCRTVIRISPGIYRQPLYVPKTKNFITFVGLFPGDIVLTWNNTANKIDHHQGSKVIGNGTFGCGSTIVEGEDFIAENITFENSSPEGSGQAVAVRITADRCAFYDCRFLGWQDTLYLHYGKLYLRDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSPHEKTGFVFLRCVITGNGGSSYTYLGRPWGPYGRVVFAFTYMDQCIKHVGWNNWGNVENETSACFYEYRCFGLGFVPSKRVKWAKMLKDKEVDQFLMHSFIDPEPQKPWLAQKMAFRIPYSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00318 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Vivi7g00318 316 SUPERFAMILY Pectin lyase-like 3 301 IPR011050 -
Vivi7g00318 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 298 - -
Vivi7g00318 316 Gene3D - 5 311 IPR012334 -
Vivi7g00318 316 FunFam Pectinesterase 2 309 - -
Vivi7g00318 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00318 Vivi-Chr7 18648460 18659867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00318 5 309 Carbohydrate Esterase AT5G47500 36.741 1.77e-67 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00318 K01051 - qsa:O6P43_004451 564.688