Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00304 ATGGGTCGCCCTCCCAGTAACGGAGGCCCCGCCTTCCGCTTCACCCAGCCGGAGGTAACAGAAATGGAAGCTATTCTTTCAGAACACAACAATGCAATGCCAGCACGAGATGTTCTTCAGGCTCTTGCAGACAAGTTCAGCGAATCACCCGACCGTAAAGGCAAAATTACCGTACAGAATAAACAGGTATGGAATTGGTTTCAAAATAAGCGATATGCGATAAGGGCTAAAACTAGTAAGACTCCTGCAAAGTTAAATATCACACCCATGCCTCGGGTTGATTTGGCCCCAGGAAGGATTATGGCTCAACCAACAGCTTCTCCGATTCCCGCTCCTTCAGCTTCAGTTCAAGGAACAGCAAAATTAGCTCCTGAAAATTCAGTTATGGAATTTGAAGCTAAATCTGGAAGGGATGGAGCATGGTATGATGTGGCTAACTTTCTATCATACAGACATTTGGAGAGCAGTGATCCGGAAGTGCTAGTGCGCTTTTCCGGTTTTGGATCTGATGAAGATGAGTGGATTAATGTACGAAAGAATGTCAGGCCACGCTCTCTGCCATGTGAGTCTTCAGAATGTGTCGCAGTGCTCGCTGGAGATCTCATACTTTGTTTTCAGGAAGGTAAAGAACAAGCCCTTTACTTTGATGCACATGTCCTTGATGCTCAAAGACGGAGGCACGACGTAAGAGGTTGTCGTTGTAGATTTTTGGTTCGCTATGATCATGATCAGTCTGAGGAAATGCAGAATGATGACTGCAAAACAGAAATCGTGACGCTTAGGAAGGTTTGTCGGAGGCCTGAAACGGATTACAGATTACATCAACTTCATGCCGTGAATGATGCACCACCTGTGGATCATCAGAAGATTAGCTTGGATCATCCAGCAAATGTTCATAGCATGAGGGTTACTAATTCTTCTGAAATGGTGCAAAAGCAGCAACAGATTGCAAATATTCATATAGTAACACCAGTTTTGCAAACAAACGTTTCCATTCCACCACAAAGTATGAATGTGGATCCAGTGAAAATTGAAACAAAACCTGATATTCAAGCTGGAAATCCTATCACTCTAGGCACCGCCACATTCAACCCCAGCGTCATTACTACTAGCAGTGTTCCGGAAGTTTCGACTCAGAACCTGCCCGAAGAGAAGTAA 1158 0.4456 MGRPPSNGGPAFRFTQPEVTEMEAILSEHNNAMPARDVLQALADKFSESPDRKGKITVQNKQVWNWFQNKRYAIRAKTSKTPAKLNITPMPRVDLAPGRIMAQPTASPIPAPSASVQGTAKLAPENSVMEFEAKSGRDGAWYDVANFLSYRHLESSDPEVLVRFSGFGSDEDEWINVRKNVRPRSLPCESSECVAVLAGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEMQNDDCKTEIVTLRKVCRRPETDYRLHQLHAVNDAPPVDHQKISLDHPANVHSMRVTNSSEMVQKQQQIANIHIVTPVLQTNVSIPPQSMNVDPVKIETKPDIQAGNPITLGTATFNPSVITTSSVPEVSTQNLPEEK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00304 385 Pfam SAWADEE domain 129 249 IPR032001 GO:0003682
Vivi7g00304 385 Gene3D - 10 86 - -
Vivi7g00304 385 Gene3D - 188 269 - -
Vivi7g00304 385 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Vivi7g00304 385 CDD homeodomain 13 75 IPR001356 GO:0003677
Vivi7g00304 385 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 332 IPR039276 -
Vivi7g00304 385 SMART HOX_1 7 81 IPR001356 GO:0003677
Vivi7g00304 385 SUPERFAMILY Homeodomain-like 12 77 IPR009057 -
Vivi7g00304 385 Gene3D - 126 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00304 Vivi-Chr7 17621463 17630660 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vivi7g00304 SAWADEE 6e-38 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00304 - - gmx:100783895 521.161