Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00262 ATGGAATCTACATGCTTTGGTTCTGATGTGGAAGACTCACTAAAGCAAAAATGTAAATCTACTACAGAAGAGAGAACAATCTCTAGTGGTGAAAATGGTTGCTTTGATTGTAATATTTGCTTGGAATCAGCTAATGACCCTGTGGTTACACTTTGTGGTCATCTCTATTGCTGGCCATGCATATATAAATGGCTTAATGTCCAAAACTCTTCAGTTGAACCAGATAAGCAGCCTACATGCCCTGTTTGTAAAGCTGTCATCTCCAATACTTCATTAGTCCCGCTTTACGGCCGAGGAAAATCAAATTCAGAAACCGAAACCGGATCGAATCAACTCCAGGTGGGTTTGGTTATACCTCATCGACCACCTCCGTACAACTTGAATGCTATGTTAACGTCTAATCGCCCGTCAAATATGCATCACGGGGCGCAGCAGCTCCATCCGAATTATTTCCAGACACAATCGCGGCCGATCCACTATCAGCATTATATCCCTCACCTTTATGAAGGTTATGGTGGCAATGGATTACCTTATCAGGGTGGTGCTGCAAGTATTGTGAATCCTGTGATTGGCATGTTCGGGGATATGGTGTTGACAAGGGTTTTCGGTGTCTCTGATGCAAATTTGTTTACTTACTCTCACAATGGAAGTATCAGTCCTAGAATGAGGAGGCAGGAGATGCAGATTGACAAGTCTCTAAACAGAGTTTCTATCTTTCTTCTTTGTTGTTTCATTTTGTGTCTTCTCTTGTTTTGA 756 0.4206 MESTCFGSDVEDSLKQKCKSTTEERTISSGENGCFDCNICLESANDPVVTLCGHLYCWPCIYKWLNVQNSSVEPDKQPTCPVCKAVISNTSLVPLYGRGKSNSETETGSNQLQVGLVIPHRPPPYNLNAMLTSNRPSNMHHGAQQLHPNYFQTQSRPIHYQHYIPHLYEGYGGNGLPYQGGAASIVNPVIGMFGDMVLTRVFGVSDANLFTYSHNGSISPRMRRQEMQIDKSLNRVSIFLLCCFILCLLLF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00262 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 248 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi7g00262 251 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Vivi7g00262 251 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Vivi7g00262 251 SMART ring_2 37 83 IPR001841 -
Vivi7g00262 251 CDD RING-HC_AtRMA-like 35 85 - -
Vivi7g00262 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 141 IPR013083 -
Vivi7g00262 251 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Vivi7g00262 251 SUPERFAMILY RING/U-box 34 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00262 Vivi-Chr7 15108001 15109807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00262 15 237 C3H Transcription Factor Family AT4G27470 47.345 2.31e-53 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00262 K10666 - gmx:100817526 307.76