Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00253 ATGGGACCTCTTGTGATTTATTCATCTAACTTTATTTGGTATCTTTTATTGGTTTTATGTGTAGTACTTAAAATTCAGGTTGTCCAAGCTAACGGTTGGCTTAACGCTCATGCAACCTTCTATGGGGCCAATAAAAGTCCAACCAGTCTTGGAGGAGCTTGTGGTTATGATGATACGTTTCATGCTGGATTTGGAGTGAACACTGCAGCAGTAAGCAGTATGCTTTTCAGAGAGGGTGAGGTTTGTGGTGCTTGCTACCAAGTTATATGTGACTATAAAATAGACCCTAAATGGTGTCTTAGAAGTCGAAGTGTTACAATAACTGTGACTAATTTTTGTCCTCCAAATAATCACGGTGGATGGTGTGATCCTCCTAACCATCACTTTGATATGTCCATGCCTTCTTTCTCTAGCATTGCACGACAAGGCAGTGAAGGCATTGTTCCTGTCCTTTATAGAAGGGTGGCATGCAAAAGAAGAGGTGGAGTACGGTTCACATTGAAGGGGCAATCTAACTTCAACATGGTGATGATAACAAACGTGGGTGGAAGTGGTGATGTGAAGGGAGTGTTGATCAGAGGAGGGAGAAGTGGAGGTTGGTTGGCAATGCATAGAAATTGGGGTGCAAATTGGCAGAGCAGTGGAGATCTAAGGAACCAGAGACTGTCATTCAAGATTAGTTTGGTTGATGGTAAAACATTGGTGTTTCTCAATGTGGTTCCTTCCAATTGGAGATTTGGACAGACATTTTCATCCCACACTCAATTCTTTTAG 774 0.4199 MGPLVIYSSNFIWYLLLVLCVVLKIQVVQANGWLNAHATFYGANKSPTSLGGACGYDDTFHAGFGVNTAAVSSMLFREGEVCGACYQVICDYKIDPKWCLRSRSVTITVTNFCPPNNHGGWCDPPNHHFDMSMPSFSSIARQGSEGIVPVLYRRVACKRRGGVRFTLKGQSNFNMVMITNVGGSGDVKGVLIRGGRSGGWLAMHRNWGANWQSSGDLRNQRLSFKISLVDGKTLVFLNVVPSNWRFGQTFSSHTQFF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00253 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Vivi7g00253 257 Pfam Lytic transglycolase 68 152 IPR009009 -
Vivi7g00253 257 PANTHER EXPANSIN-A15 16 255 IPR002963 GO:0009664
Vivi7g00253 257 CDD DPBB_EXPA_N 32 157 - -
Vivi7g00253 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 162 IPR007112 -
Vivi7g00253 257 Gene3D - 19 158 IPR036908 -
Vivi7g00253 257 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Vivi7g00253 257 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Vivi7g00253 257 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Vivi7g00253 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Vivi7g00253 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Vivi7g00253 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Vivi7g00253 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Vivi7g00253 257 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Vivi7g00253 257 SMART dpbb_1 68 152 IPR007112 -
Vivi7g00253 257 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
Vivi7g00253 257 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Vivi7g00253 257 Gene3D - 162 257 IPR036749 -
Vivi7g00253 257 SUPERFAMILY Barwin-like endoglucanases 32 180 IPR036908 -
Vivi7g00253 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Vivi7g00253 257 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Vivi7g00253 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Vivi7g00253 257 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Vivi7g00253 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Vivi7g00253 257 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00253 Vivi-Chr7 14974396 14975594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00253 14 257 Expansin Gene Family AT3G15370 58.909 3.80e-115 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00253 - - gmx:106795376 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g00253 7 14974396 14975594 Vivi7g00253 7 14974396 14975594 ECH
Vivi2g06740 2 205606030 205620035 Vivi7g00253 7 14974396 14975594 PCT