Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00242 ATGGGAGTTCCAAATAAAGATCCTCTCTCACAGTTGAGTTTACCTCCTGGTTTCAGATTCTTCCCTACCGATGAAGAGCTTCTTGTTCAGTACCTATGTCGCAAAGTTGCAGGACATCACTTTTCTTTGCCAATTATTGCTGAAATTGATTTATACAAATTCGATCCATGGGTTCTTCCAGGTAAAGCGAATTTCGGTGAGAAAGAATGGTATTTCTTCAGTCCAAGGGACAGGAAATATCCAAATGGTTCACGACCAAACAGAGTTGCTGGGTCGGGGTACTGGAAAGCTACTGGAACGGACAAAATCATCACCACCGAAGGTAGAAAAGTTGGCATAAAGAAAGCACTTGTTTTCTATATCGGTAAAGCACCAAAAGGAACTAAAACTAATTGGATTATGCATGAGTATCGCCTTCTTGACGCTTCACGAAAACACAACCTTGGTAGCTCCAAATTGGATGATTGGGTCTTGTGTCGCATATACAAGAAGAACTCAAGCTCGCAAAAGGAAGTTCAATCATTTTCGGGCAAAGAATACAGCAATGGTTCATCGCCTTCCACATCCTCCCACGTGGAGGATATGTCGGACTCATTTCCGGTAATTGACGACCAGAGCTTTGCGCTTCCGCGGGTGACATCGCTCAAAATGCTACAGCAAGAGGAAAAGTTCGGGTTTCATAACATGGGAGCCGGAATTTTCTCTGATTGGGTTACCCCGGCAGAGTTTGACACGATACCGGAATTTGATTCCGGAAGCCAAACACAAGGGATGCTGAATTACAGCTGCACTGATTTTTGTGTCCCTTCAGCGCCGCCGTTTGGGCAGTTGGATCTCTCGGCGGGATTTAGGAACCCCACGGAGGAAGAGGTTCAGAGTGGCATGAGGACTCACCGGGTTACAGATAATGATAATTTCAATTTGTATCAACATAATTCAAATGTGTTTTTGTCGGGCTTGGGCGACCCGTTTGAGTTTGGGTCTTCGGGTTATTCTTTTGGTTTATAG 1008 0.4464 MGVPNKDPLSQLSLPPGFRFFPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPGKANFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDASRKHNLGSSKLDDWVLCRIYKKNSSSQKEVQSFSGKEYSNGSSPSTSSHVEDMSDSFPVIDDQSFALPRVTSLKMLQQEEKFGFHNMGAGIFSDWVTPAEFDTIPEFDSGSQTQGMLNYSCTDFCVPSAPPFGQLDLSAGFRNPTEEEVQSGMRTHRVTDNDNFNLYQHNSNVFLSGLGDPFEFGSSGYSFGL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00242 335 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Vivi7g00242 335 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Vivi7g00242 335 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Vivi7g00242 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 195 - -
Vivi7g00242 335 MobiDBLite consensus disorder prediction 173 194 - -
Vivi7g00242 335 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vivi7g00242 335 FunFam NAC domain-containing protein 72-like 23 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00242 Vivi-Chr7 13757419 13759244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00242 1 265 NAC Transcription Factor Family AT4G27410 63.636 3.28e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi7g00242 NAM 8.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00242 - - gmx:100811301 501.901