Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00209 ATGGGAAGAGCTCCATGCTGTGATAAATCAAAAGTGAAAAGAGGATCATGGTCTCAGGAAGAAGATGTTATCCTGAAAAACTATCTTCATGAACATGGCACAGCTGGTAATTGGATAGCTCTTCCTCAAAAAGCAGGTCTAAAGCGTTGTGGAAAAAGTTGTCGGTTAAGATGGTTGAACTATTTGAGGCCTAATATCAAGCTTGGAGGTTTCACTGAGGAAGAAGACAATATCATCTTCAATCTTTATAGCACCATAGGAAGCAGGTGGTCCCTTATAGCAGCTCAACTAGCAGGAAGAACAGATAACGATGTGAAGAATCATTGGAACACTAAACTTAAGAAAAAGTTTTTGGCACAAAACTCATCCACAAGCAACAATATATACACTTTCAGCAATACTAGTACTACTAGTTCTGACCACTTTTCAAGTACTTTGACTTTTCAACCTCAAGTTGAACAACCCTTTGTCTTTGATCAAAACATGAACACATCTTGTTTTGATTCATATAATGTTATGGATTTGGATCAAACACCAATTGGTATTCCTTTACCAATGACAATGAAATCAGAAGCTTTGTATGCTGGAAGTAGCTTGAGTAGTAGCTGTAGTACTACACCATCCACCATGGAAATTTCAAGTTTTTCAAGTGCACCTTTCTATGAAGTTAAGAACAATCATAGTCAATGGTTTGGGAATGATCATGATGATGCAATTCTTCTTGAGTTTGTTCTTGATGATTTATTGAGCAATGGACCCTCGTCGGGCTAA 771 0.3748 MGRAPCCDKSKVKRGSWSQEEDVILKNYLHEHGTAGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKLGGFTEEEDNIIFNLYSTIGSRWSLIAAQLAGRTDNDVKNHWNTKLKKKFLAQNSSTSNNIYTFSNTSTTSSDHFSSTLTFQPQVEQPFVFDQNMNTSCFDSYNVMDLDQTPIGIPLPMTMKSEALYAGSSLSSSCSTTPSTMEISSFSSAPFYEVKNNHSQWFGNDHDDAILLEFVLDDLLSNGPSSG 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00209 256 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vivi7g00209 256 FunFam Transcription factor RAX3 7 68 - -
Vivi7g00209 256 CDD SANT 71 113 IPR001005 -
Vivi7g00209 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vivi7g00209 256 Gene3D - 70 140 - -
Vivi7g00209 256 Gene3D - 6 68 - -
Vivi7g00209 256 CDD SANT 16 62 IPR001005 -
Vivi7g00209 256 PANTHER OS09G0431300 PROTEIN 1 215 - -
Vivi7g00209 256 SMART sant 13 64 IPR001005 -
Vivi7g00209 256 SMART sant 67 115 IPR001005 -
Vivi7g00209 256 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vivi7g00209 256 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vivi7g00209 256 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Vivi7g00209 256 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vivi7g00209 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00209 Vivi-Chr7 12467623 12469122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00209 1 120 MYB Transcription Factor Family AT5G57620 77.500 6.25e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi7g00209 Myb_DNA-binding 9.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00209 K09422 - gmx:778160 280.796