Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00208 ATGATGGTAGGAGAACATCATCGAGCGAATCCAACGGTTCATGTGCCTCCATGGAACTTCCATGATGATCCAACGGCTGAGATTTATTCCTCTTATTTCCCTGACGATGGCAATGCTGGCGCCGGAGATTACTCTCCGTACTATCTCCGTGAAGCACTGACGGCGCTTCAGCGTTATCTTCCATCAAACGAGTTAGACGCCGATTCCGACTCGGATGTTCTTGGCCGTGACTCGGAGTCTCCGGTGGACGCTTACTCATGCGATCATTTCCGCATGTACGAGTTCAAGATAAGAAGATGTGCTCGTGGAAGATCGCACGACTGGACGGAGTGCCCGTACGCTCATCCCGGAGAGAAAGCACGCCGCCGTGATCCGAGGAAGTTTCACTACTCCGGCACGGCGTGTCCTGATTTTCGCAAAGGAAACTGTAAGAAAGGTGACGCATGTGAGTACGCGCATGGTGTTTTCGAGTGTTGGCTTCATCCTGCACGTTACCGTACTCAGCCATGCAAAGATGGTACTAGTTGCCGCCGTCGTGTTTGCTTCTTCGCTCACACACCGGAGCAGATCCGTCTCAATGTTCAACAGAGTACTCCACGGAGCCTTAACTCGCCGGATTCTTACGACGGTTCTCCACTGAGACAAACTGCTTTGCCGTTTCTGTCATCTCCGATTTCAATTTCTCCACCGGAGTTAGAGTCGCCGCCGATATCTCCGATGAGCAAATCATTAGGTTCAAGTTCAGTTAACGAGATGGTTGCTTCCTTAAGAAATTTACAGTTAGGGAAGTTAAAATCTATGCCGGTTAGTAGAAACCTTACATTCGGGTCAAGTTTCGGGTCACCAAGAGGATCCGTACTTCGACCCGGGTTTTGCTCTCTTCCTAATACACCTACACAAAAGCCTAATTCGGGTCGGGTTGGTGTTGGGTATTTTGATCTCTGGGAACAAAGTTGTGAGGAGGAGCCTGTTATGGAAAGAGTTGAATCTGGAAGAGATATAAGGGCTAAGATGTTTGAGAAACTAAGCAAAGAAAATTCAATGGAGAATTCGGATTCGGATTCGGGTATGGGTCAATCAGGTGGGGCTCCGGATGTTGGGTGGGTTTCTGAGTTGCTGAAATGA 1125 0.4907 MMVGEHHRANPTVHVPPWNFHDDPTAEIYSSYFPDDGNAGAGDYSPYYLREALTALQRYLPSNELDADSDSDVLGRDSESPVDAYSCDHFRMYEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQIRLNVQQSTPRSLNSPDSYDGSPLRQTALPFLSSPISISPPELESPPISPMSKSLGSSSVNEMVASLRNLQLGKLKSMPVSRNLTFGSSFGSPRGSVLRPGFCSLPNTPTQKPNSGRVGVGYFDLWEQSCEEEPVMERVESGRDIRAKMFEKLSKENSMENSDSDSGMGQSGGAPDVGWVSELLK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00208 374 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
Vivi7g00208 374 FunFam Zinc finger CCCH domain-containing protein 66 87 155 - -
Vivi7g00208 374 MobiDBLite consensus disorder prediction 340 374 - -
Vivi7g00208 374 PANTHER UNKEMPT FAMILY MEMBER 51 374 IPR045234 -
Vivi7g00208 374 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Vivi7g00208 374 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Vivi7g00208 374 Gene3D - 130 192 - -
Vivi7g00208 374 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 154 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00208 Vivi-Chr7 12403096 12404562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00208 85 273 C2H2 Transcription Factor Family AT5G12850 50.500 3.08e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi7g00208 zf-CCCH 1.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00208 - - aprc:113867365 608.216