Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00198 ATGAACCATTACCAACAAGACCAAATGATGCTCATTTCTCAACTCTTTTTTGCTACTGCTCATGCTTACACTGATACAGTTTCTCTACAAGTGGAGAAGAAGCCAAGACATAGACGAACCAAGAAGAGTAAACCTGGAGAAAACACTGCAAATGAAATGAACAAAAAGAGGAAAATTATTGAAAAACAAATGATTTTGTTGGAAGAACATTTTGAGAATGAACACAAACTTGAGTTAGAGAGAAAATATAAACTCGCAATGGAACTTGGTTTGGATCCCAGACAAGTTGTTGTTTGGTTTCAAAACCGTAGAGCTCGTTGGAAGAACAAGAAACTCGGAGAAGAGTACCTAAATTTGAAGAAGTTCCATGAATCTACCATGCTTTGA 387 0.3643 MNHYQQDQMMLISQLFFATAHAYTDTVSLQVEKKPRHRRTKKSKPGENTANEMNKKRKIIEKQMILLEEHFENEHKLELERKYKLAMELGLDPRQVVVWFQNRRARWKNKKLGEEYLNLKKFHESTML 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00198 128 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Vivi7g00198 128 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Vivi7g00198 128 SUPERFAMILY Homeodomain-like 57 115 IPR009057 -
Vivi7g00198 128 CDD homeodomain 55 111 IPR001356 GO:0003677
Vivi7g00198 128 Gene3D - 46 115 - -
Vivi7g00198 128 SMART HOX_1 53 114 IPR001356 GO:0003677
Vivi7g00198 128 MobiDBLite consensus disorder prediction 31 55 - -
Vivi7g00198 128 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 26 125 IPR045224 GO:0003700
Vivi7g00198 128 Pfam Homeodomain 56 109 IPR001356 GO:0003677
Vivi7g00198 128 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Vivi7g00198 128 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00198 Vivi-Chr7 11735261 11735751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00198 1 128 Homeobox Transcription Factor Family AT2G18550 50.365 4.88e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vivi7g00198 Homeodomain 9.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00198 K09338 - gmx:100809616 164.081