Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00177 ATGAAGCTTCTATGCTTAATGAGGATTTTATATGCTTCTTTCCATTCAGCTTCACCATCGGTTATGGTTATTATCATACCAGTGTTCATTATGGCACGACCATTAGCAAAAATATGTGACATCAATGACAGCAAAGAACTTTGGAAAGTTTCTGTTCGTGTGCACCACAAATGGACAGTTGTTTCAAACAAGAGGGAGCATTTTGAGATGATCTTTGTTGATGTATCGGGTGGTGACATACATGTTGTTGTTCCTGCACCTCATGTATCTCTTTTTTCTGAAAAAATGGTCTTGGATCATAGTTACACTATTTCCAATTTTAAGGTTCAGGCTAATGTTGCGGCTTTCAGACCTTCGTCTCATAAGTTTATGTTGAAGTTTACTGCTGGCACTACGGTTACGGATGATAACAACGCTGAAATACCTCCAAAGCCGTTGGTGTTTACTAAATTTACTGATATAATAAACGGCAACTTTAACAAGGATGTGCTAATAGATGTCATTGGTATGGTGGAAAGTATTGGGTATTCACAGACTACAACAGGTGCCCGGAAGCAGCAGATTAACATGATGCTGCGTGACGGGGGTGAGAATACTATCAATTGCACGCTTTGGGAATCCTATGCTGAACAATTCATGAAGTTCAAGCAGGAGCGCGGAGATGATTCAGGTCCTATATTTGTCATGATTCAATATGCTAAAGTCAAGGAACAGGGTAAGTTTCCACTGTCCGTGACAAACACGTTTAATGTTACCGTCCTTGGTCTGAATATTGATTTGCTGCCGATGAAAGAGTTTATAGAAAGTTTTCCGAAGGATTCCATGATTACGTTGTCTGGCCAGGAGGGTTCCAATTCACAGCTTTCAGCACAGAACTCTGAAAATCAACAGATGACTCCTGTACAAAAATTGCTTTCAAAGGCTGTTGTAATGCCTATTGGGGATATTATAAAACTCAGAACTATTACATTTTGTGCGACTGTGGGAGAAACTAAAATGCTGGTTGCCTCTCCGTATGGCTGGTATTATCGTGGTTGTCATGTTTGCTCATGTATTGCGCGTGGTGACAGAGCTCCGTTTGAGTGTGAGGCTGGACATTTCACTGAGGCAGAGATTTTTAGGTATAAGATTGAGATTGAGGTTACTCATGCCGGGAATAGCTGTAACTTTTTATTTTGGGATCGAGAGTGTGAGTTACTTTTGGGATTGTCTGCTTCTCAGCTGCGTCATACAATGATTAAGGCTGGCATTCATGATCCCTTGGAATTCCCACTGGTATTGGATCAGATGTTGGATTGCAAGATGGCTTTCAAAGTTAAGTGGCAACCACGTTGGAAGAATGCCTCTGTCGTTATGCTATTGAAGAATGACCCTTTTGTGAAAGAGCTTGCTGATCAGTTTGACACAGATGAAATGAAACCAGCTGCTGTCGAAGCAATGACCACTGTTAGATCGGAACCTAATTTTGTTGTCGATCTTGATGTGAGTTCAACGCACAACACAGATCCAATTACTCCTACTGGAAAAAGACACTTTCCAGGCGTATCAAGCGAGTCAACAACCTCGGATGGCACGTGTGATGGAGAACTTTCATCAAACAAGTTAAAGAAAATTATAAAAATAGAGAAGATAGATTAG 1638 0.4078 MKLLCLMRILYASFHSASPSVMVIIIPVFIMARPLAKICDINDSKELWKVSVRVHHKWTVVSNKREHFEMIFVDVSGGDIHVVVPAPHVSLFSEKMVLDHSYTISNFKVQANVAAFRPSSHKFMLKFTAGTTVTDDNNAEIPPKPLVFTKFTDIINGNFNKDVLIDVIGMVESIGYSQTTTGARKQQINMMLRDGGENTINCTLWESYAEQFMKFKQERGDDSGPIFVMIQYAKVKEQGKFPLSVTNTFNVTVLGLNIDLLPMKEFIESFPKDSMITLSGQEGSNSQLSAQNSENQQMTPVQKLLSKAVVMPIGDIIKLRTITFCATVGETKMLVASPYGWYYRGCHVCSCIARGDRAPFECEAGHFTEAEIFRYKIEIEVTHAGNSCNFLFWDRECELLLGLSASQLRHTMIKAGIHDPLEFPLVLDQMLDCKMAFKVKWQPRWKNASVVMLLKNDPFVKELADQFDTDEMKPAAVEAMTTVRSEPNFVVDLDVSSTHNTDPITPTGKRHFPGVSSESTTSDGTCDGELSSNKLKKIIKIEKID 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00177 545 Gene3D - 139 276 IPR012340 -
Vivi7g00177 545 CDD RPA1_DBD_B_like 166 271 - -
Vivi7g00177 545 MobiDBLite consensus disorder prediction 496 527 - -
Vivi7g00177 545 MobiDBLite consensus disorder prediction 512 527 - -
Vivi7g00177 545 Pfam Domain of unknown function DUF223 69 164 IPR003871 -
Vivi7g00177 545 Gene3D - 33 135 IPR012340 -
Vivi7g00177 545 Gene3D - 281 457 IPR012340 -
Vivi7g00177 545 SUPERFAMILY Nucleic acid-binding proteins 337 445 IPR012340 -
Vivi7g00177 545 SUPERFAMILY Nucleic acid-binding proteins 34 134 IPR012340 -
Vivi7g00177 545 SUPERFAMILY Nucleic acid-binding proteins 148 274 IPR012340 -
Vivi7g00177 545 CDD RPA1_DBD_A_like 49 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00177 Vivi-Chr7 10371559 10374303 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00177 48 440 Core DNA Replication Machinery Family AT4G19130 20.476 1.01e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00177 - - vvo:131618652 1080.86