Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00172 ATGGCTGGTGGCGTTTCCAGTCGAACTCGTAGCAAGAATGTTCAGTTGTTCAATAGTGTTTCCCTTGATGGACCATCTTCCTCTAAATTAAAGCGTAGTAGAAAGGATTATGAAGATGAGACAGGTTTTCACTCTGCTTCTTGTTCTAAAAAAACTAGGGTAAAAGAAAAGTCTTTTGTCTTGTCTCAAAATATTAAGGTTATTTGCATTGATGATGATGATGATGATGATGGTGATGATGATGTCAAAAGAAAAGTAGGGAGTGATGAAAGTGGAAGAATTGATGGGCTTGATGCTAAAAAACAAGTAGAGAGTGTTGGAGGAAGTCATGATCACTTGGTTGATGAAAACTATGATGATGATGAAAGTGATGAAAGTGAGACTAGTGATGAAGAATTTCAAGTTAATGAGGTGAGTGAAGTTTCTGACAATGATAATATCAATTCATCTTCTTATGACAATTATGATGATGATGAGAAAGAGGAGAAGAAAAATGTTTGGAGTGTGGTGGAGGAGCTGGTGAGAGAGGTGAAAGATGAAAAAAGTGGAGTGAAAGATGGAAAAAGTGGAATTGAGGAGAGCAATAGTATTGAGGAGGTAAAGATTCAGAATAGTCCTTCTTCTGTACACGGATCGGAGAATGCATATTATGCTAGTGTAACAACCTCTAGTGCCTTAGAGAAGAAGGGTTCTTTTGATCCAATGAAACCTTGTGCTTCTTCAAACCTGTATGAAGAATTCTCGGAGACAACAAAAGCAAAGAGTGTGGAAATTGTCTCTCTTGATGATGATGATGATGAAAGTGTGAATGTTGGTGATTCTGATGAAGGAAAAGAGCAATATGTCCGAGGTTTAGGTGTTGAAGGAGTTTCTTTGTTTCAAACGAAACAAGAAAAGATGGGGGGTTCAGATAAACACACAATCATGGAGAGCAATGAAAGGGATCATGAATATAGAGCTAACATCTATAATGGAGAGAAGAATGAATCCATGGAGAACAAAGGAAGGGGTCATGAAGGTAGAGCTAACATCTATAATGGTGAGAAAAAGGAATTCATGGAGAACAAAGGAAGGGATCATGAAGGTAGAGCTAAGATATATAATGGTGAGAAAAAGGAATTCATGGAGAACAAAGGAAGGGATCATGAAAGTAGAGTTAACATCTATAATGATGAGAAGAAGGAATCCATGGATAACAATGGTTTGATGAATCAAAGGGATAAAAACACACTTTTTCTGCCAAAGGAGTTGCGCTCGACTAAACGTCTTGCTGAATTCTACTGGGGCAACAAGACTACCGTGAAGAATGATTCCATTGTTATGGAGGTGAAGGGTGATGTCGTTGATCGGCAGCCACCACTGGTTTCGGTTGAGGTGCATCCATTGATATGGAGCCTGAAGAAGGTGAAAAAATTGCAAAAGACCAAAGAGGAGGAGGAGGAGCAAGTGTTATGGGATGAAATGAATGCATCCCTTAGAGAAGAGGAAGCTGAATCTATGATTGGAAATTTAGGGGCAAATGGAAAAATGGCAAGTCCATATTCTCTCTGTGAACATGATAGTTTTCTCGACGAAGAGATTGGTGTATATTGCAAATTGTGTGGTTTTGTTTTCACTGATATCAAAGATGTGTCACCACCAGTGGTTGATAGATTTCCCAACGGTTCGGGAAAAAGATCTTCGTTTGATAATTCAGTAAATGTCTCACCCTTGGATGGATCTCAGTTCAATGTTTCTGATGGTGGTGACTCAGAGGCTAATCATTTCTCTCATGTTAAAGGCACAGTTTGGGACCTAATTCCTGGTGTGAAACAAACTTTATATCCTCACCAACAAGAAGGATTTGAGTTCATTTGGAAAAACTTGGCAGGAAACATCAATCTTCACGAGTTGAAGTACGCCGATCCTCATAGAGAGGGTGGCTGTATTATTTCACATGCTCCCGGAACGGGAAAGACAAGGTTGACCATAGTGTTTCTTATGGCTTATTTGAAAGTTTTCCCGGAGTGTCATCCAGTTATTGTTGCTCCTGCGAGTTTGTTACTTACTTGGGAAGATGAGTTCAAAAAATGGGACATTGGAGTTCCATTTCACAATTTTAACAATCTTGAATTATCTGATAAAGAGTACAGAGATGCTGTTAATGCGGATAATTGGTATAATTTACCTCCTAGTAAAGATACAACGCGAAAGGCGAAACTGATTTCGTGGTTCAAAGAAAAGAGCATTATGGGAATCAGTTATAATTTATACGAGAAGCTAGCCGGAGGAGGAGGAGGAGGAGAAGGAGAAGAATTCCAAGATAAGAAAAAGAAAAAAAATGCAAGTGTGGAGAAGACAAAAGACAACAGTGATATCGGAAAGGTTCTACGCGAAATTCCTGGTTTGTTGGTTTTAGATGAAGGACACACACCAAGAAATCAAAGAAGTCGTATTTGGAAGGTATTGTCCAAGATTCAAACAAAGAAGCGAATTATACTCTCCGGAACTCCTTTCCAGAACAACTTCTATGAACTTTACAACACTTTGAGCTTAGTGAAGCCTTCTTTTCCTAACACCATACCGCGTGAGCTGAAGAAGTTTTGCCAGAAGCAGGAACCTAAAAAAACGGCGAAAGAATGGAGCTGGGAAGCAAATAATGGCAACACAAGAGAAAATCCTTCTGACGATAAGATCATGCAATTCAAGTTTCTAATGGATCCTTTTGTTCATGTTCACAAAGGCGCGATCCTTCAAAAGAAGCTTCCTGGACTAAGAGATTGTGTGCTAGCTTTGAAGCCGGACCGTTTGCAAAAACAAATTCTTGAGAGCATTCAAAGTTCTCAAAACACATTGATCTATGAGCATAAAGTGACAATGGCATCAGTTCATCCATCTCTTTTGCTCGAATGCGGTCTTTTGGAAGAAGAGGAATCTGTTATCGACAAGAACCGGTTAGAAAAGCTTAGATTGAACCCTTACGAAGGCGTGAAAACAAAGTTTTTGGTGGAGTTTGTTAGACTTTGTGATGCTGTTAATGAGAAAGTTCTTGTGTTCAGTCAATTCATCCGTCCTTTAAGCTTAATTAAAGACCAATTAAACATGGCTTTTAATTGGAGCGAGGGGAAAGAAATGCTGTACATGGACGGAAAGGTTGATCTAAAGGACAAACAATCCTTAATACATAGCTTCAATGATGAAAATTGCCAAGCAAAGATTCTCCTTGCATCCACAAAAGCTTGCTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTGGTGCTACTTGATGTTGTATGGAATCCGTCAGTCGAACGACAGGCTATAAGCAGAGCATATAGGATTGGACAGAAGAAGGTTGTATACACTTACCATCTGCTCACTCAAGGGACTACTGAGTACCTAAAATATTGCAAGCAGGCGGAAAAGGATCGCTTATCTCAACTTGTTTTTTCGACTAAGGATGAGTTAAAGAGCTGTGCAGTGGAGTTTCAAGATAGAGTTCTTGATCAAATGAAACAGCATGAAAAGCTCAAAGACATGTTTGGTGACTGTGTGGTACAGCCCAAGGAGCGCGATTTGGTTGACAGTTTCGGCCATTCATTATGA 3588 0.3952 MAGGVSSRTRSKNVQLFNSVSLDGPSSSKLKRSRKDYEDETGFHSASCSKKTRVKEKSFVLSQNIKVICIDDDDDDDGDDDVKRKVGSDESGRIDGLDAKKQVESVGGSHDHLVDENYDDDESDESETSDEEFQVNEVSEVSDNDNINSSSYDNYDDDEKEEKKNVWSVVEELVREVKDEKSGVKDGKSGIEESNSIEEVKIQNSPSSVHGSENAYYASVTTSSALEKKGSFDPMKPCASSNLYEEFSETTKAKSVEIVSLDDDDDESVNVGDSDEGKEQYVRGLGVEGVSLFQTKQEKMGGSDKHTIMESNERDHEYRANIYNGEKNESMENKGRGHEGRANIYNGEKKEFMENKGRDHEGRAKIYNGEKKEFMENKGRDHESRVNIYNDEKKESMDNNGLMNQRDKNTLFLPKELRSTKRLAEFYWGNKTTVKNDSIVMEVKGDVVDRQPPLVSVEVHPLIWSLKKVKKLQKTKEEEEEQVLWDEMNASLREEEAESMIGNLGANGKMASPYSLCEHDSFLDEEIGVYCKLCGFVFTDIKDVSPPVVDRFPNGSGKRSSFDNSVNVSPLDGSQFNVSDGGDSEANHFSHVKGTVWDLIPGVKQTLYPHQQEGFEFIWKNLAGNINLHELKYADPHREGGCIISHAPGTGKTRLTIVFLMAYLKVFPECHPVIVAPASLLLTWEDEFKKWDIGVPFHNFNNLELSDKEYRDAVNADNWYNLPPSKDTTRKAKLISWFKEKSIMGISYNLYEKLAGGGGGGEGEEFQDKKKKKNASVEKTKDNSDIGKVLREIPGLLVLDEGHTPRNQRSRIWKVLSKIQTKKRIILSGTPFQNNFYELYNTLSLVKPSFPNTIPRELKKFCQKQEPKKTAKEWSWEANNGNTRENPSDDKIMQFKFLMDPFVHVHKGAILQKKLPGLRDCVLALKPDRLQKQILESIQSSQNTLIYEHKVTMASVHPSLLLECGLLEEEESVIDKNRLEKLRLNPYEGVKTKFLVEFVRLCDAVNEKVLVFSQFIRPLSLIKDQLNMAFNWSEGKEMLYMDGKVDLKDKQSLIHSFNDENCQAKILLASTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKKVVYTYHLLTQGTTEYLKYCKQAEKDRLSQLVFSTKDELKSCAVEFQDRVLDQMKQHEKLKDMFGDCVVQPKERDLVDSFGHSL 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00172 1195 CDD SF2_C_SNF 991 1120 - -
Vivi7g00172 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 795 1148 IPR027417 -
Vivi7g00172 1195 MobiDBLite consensus disorder prediction 178 195 - -
Vivi7g00172 1195 MobiDBLite consensus disorder prediction 117 138 - -
Vivi7g00172 1195 MobiDBLite consensus disorder prediction 1 53 - -
Vivi7g00172 1195 MobiDBLite consensus disorder prediction 297 316 - -
Vivi7g00172 1195 MobiDBLite consensus disorder prediction 178 213 - -
Vivi7g00172 1195 Gene3D - 584 889 IPR038718 -
Vivi7g00172 1195 MobiDBLite consensus disorder prediction 196 213 - -
Vivi7g00172 1195 Pfam Helicase conserved C-terminal domain 1002 1109 IPR001650 -
Vivi7g00172 1195 SMART helicmild6 1020 1109 IPR001650 -
Vivi7g00172 1195 MobiDBLite consensus disorder prediction 1 27 - -
Vivi7g00172 1195 MobiDBLite consensus disorder prediction 763 783 - -
Vivi7g00172 1195 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 997 1150 IPR001650 -
Vivi7g00172 1195 Gene3D - 916 1186 IPR027417 -
Vivi7g00172 1195 MobiDBLite consensus disorder prediction 28 53 - -
Vivi7g00172 1195 SMART ultradead3 603 857 IPR014001 -
Vivi7g00172 1195 MobiDBLite consensus disorder prediction 260 279 - -
Vivi7g00172 1195 Pfam SNF2-related domain 623 945 IPR000330 GO:0005524|GO:0140658
Vivi7g00172 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 864 IPR027417 -
Vivi7g00172 1195 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 633 849 IPR014001 -
Vivi7g00172 1195 MobiDBLite consensus disorder prediction 299 316 - -
Vivi7g00172 1195 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 26 1186 IPR044567 GO:0080188
Vivi7g00172 1195 MobiDBLite consensus disorder prediction 80 116 - -
Vivi7g00172 1195 MobiDBLite consensus disorder prediction 761 783 - -
Vivi7g00172 1195 MobiDBLite consensus disorder prediction 70 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00172 Vivi-Chr7 9855611 9860132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00172 1007 1156 RAD5 or RAD16-like Gene Family AT5G43530 38.667 1.02e-17 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi7g00172 SNF2_N 1.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00172 K10875 - gmx:100806733 890.182