Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00077 ATGAAGATGAAGGTGGCATGGCCGGAGAAACATTTACAGATTATCGACCACCAAAAGTATCGATTGGACCTCCACACCCAGATCCTGTTGTGGAGACATCTTCATTGGCTGCAGTGCAGCCACCGGATCCTACCTATGATCCAAAGTCTAAAGATATTTTGGAAAGTTCAAAGGCTTTATCATGTTTGCAAATTGAGACCTTGGTCTATGCTTAGACACCTTCAGCACCTCCCTGGTGGAGCTAGGGCAGGATTCTTTATTGGAGATGGAGCTGGTGTAGGTAAAGGTCGGACAATTGCAGGTCTAATTTGGGAGAACTGGCACCATGGAAGGACAAAAGCATTGTGGATTTCTATTGGTTCAGACTTGAAGTTTGATGCTAGAAGAGACTTGGATGATGCAGGTGCAACATGCATTGAAGTGCATGCTTTGAACAAACTACCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGATCAGGGAGGGAGTTGTCTTCTTGACATACAATAGCCTTATAGCATCTTCAGAGAAAGGTCGTTCTCGTCTTCAGCAGCTTGTGCAGTGGTGTGGACCAGGGTTTGATGGCCTTGTAATTTTTGACGAGTGTCACAAAGCAAAAAATTTGGTCCCTGAAGCTGGTAGTCAGCCAACACGCACTGGAGAAGCAGTGCTTGAAATTCAGGATCGACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCAACTGGTGCATCTGAACCCCGCAATATGGGTTATATGGTTAGACTTGGTCTTTGGGGAGATGGAACTTCTTTCTCTGAGTTCCGTGAATTTTTGGGTGCTCTTGACAGAGGGGGTGTTGGAGCTCTAGAATTAGTTGCCATGGACATGAAAGCAAGGGGGATGTATTTATGCCGGACACTTAGTTATGAGGGTGCTGAGTTTGAAGTTATTGAAGCACCATTAGAAGATAAAATGATGGACATGTATAAAAAGGCAGCAGAATTTTGGGCAGAATTACGAGTAGAATTGCTGTCAGCTAGTGCTTTCCTAAATGATAAACCTAACACTAGTCAACTATGGCGATTGTACTGGGCAAGCCACCAGCGTTTCTTTAGACACATGTGTATGTCTGCTAAAGTCCCTGCTACTGTAAGACTAGCAAAGCAAGCATTAGTAGATGAAAAATGTGTAGTCATTGGTCTTCAGAGTACTGGTGAAGCAAGGACGGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGAGAATTGCTGCTTAAATTTGTGGAAGAAAATTATCCATTACCAGAGAAACCTGAACTCCTCCCAGGAGAGGATGGTGTTAAGGAGCTCCAAAGGAAGAGGCACTCTGCAACCCCTGGTGTTTCATTAAAAGGAAGGGTCAGAAAAGTAGCCAAGTGGCAACCTCCTAGTGATGCAGAAACTGACGAAGAATCTGAAAGTGATTCTGACATTGAATCTAATGACTCTGATGAGGAGTTTCAGATATGTGAAATTTGCACCACTGAGGAGGAAAGGAAAAAAATGTTACAGTGTTCCTGCTGTGGTAAATTAGTCCATTCCACATGCTTGATGCCACCAATTGGTGATATAGTTCCTGAAGAGTGGTCATGCCATTTATGTAAGGAAAAAACAGATGAATATCTTCTAGCAAGGCAGGCCTACATAGCCGAACTCCAGAAGAGATATGATGCAGCCTTGGAACGTAGGACAAAAATATTAGAGATCATTCGTTCTTTGGATCTTCCAAATAATCCCTTGGATGATATTACTGACCAGCTAGGAGGGCCCGACAAAGTTGCAGAAATTACAGGAAGGAGAGGCATGCTTGTGAGGGGCCCTACCGGAAAGGGTGTAACTTACCAGGCTCGTAATACAAAGGATGTCACCATGGAAATGGTTAACATGCACGAAAAGCAGCTTTTTATGGACGGAAAAAAGTTTGTTGCTATTATTTCTGAAGCTGGATCAGCTGGTGTTTCTTTGCAGGCAGATAGGAGAGCGGCAAATCAGAAAAGAAGGGTTCATTTAACGCTAGAGCTTCCGTGGAGTGCTGACCGTGCAATTCAGCAGTTTGGAAGAACTCATAGATCAAATCAAGCTTCAGCACCAGAATACAGGATACTCTTTACTAATCTTGGTGGAGAACGACGATTTGCATCAATTGTTGCGAAGAGATTAGAATCTCTCGGTGCTTTGACTCAAGGCGACCGCAGGGCTGGGCCTTCATTAAGTGCTTATAATTATGATAGTGCTTATGGAAAGAGGGCTCTGGTGATTATGTACAAAGGAATAATGGAGCAGGATTCTCTACCTGTTGTTCCTCCAGGATGTTCATCTGAGAGACCAGATACTATTCAAGATTTCATTACGCAGGCAAAAGCTGCTCTTGTATCTGTTGGGATAGTTAGGGACACAGTTCTTGGAAACGGTAAAGATCCTGGAAGGTTATCTGGTCGAATTATTGATTCAGATATGCACGAAGTTGGACGATTCCTCAACCGGCTTTTGGGTCTACCTCCTGATATTCAAAACGGGCTATTTGAGTTATTTGTGAGCATCTTGGATCTTCTCGTTCGGAATGCACGCATTGAAGGTAACCTCGACACAGGAATAGTTGACTTGAAAGCTAATGTTATAGAACTACAGGGGACTCCAAAGACAGTTCACATTGATCAATTAACTGCGGCTTCAACTGTTCTGTTTACATTCATCTTGGATCGGGGGATCACGTGGGAGTCAGCAAGTAACATGCTGAATGAAAAACAGAAGGATGGGCTTGGCTCAGCCAATGATGGCTTCTATGAGTCCAAGAGGGAATGGTTGGGAAAACGTCATTTCATTTTAGCGTTTGAAAGTTCCAGTTCTGCTTCGGGTATGTATAAGATAGTCCGTCCACCTGTTGGGGAATCAAACCGGGAGATGCCTCTATCTGAATTGAAAAGTAAATACAGAAAAGTTTTATCCTTAGAAAAGGCTCAAACTGGTTGGGAAGAGGAATATGAAGTTTCATCTAAACAGTGCATGCACGGTCCCAATTGTAAGATTGGCAGCTTCTGTACAGTGGGAAGAAGACTACAGGAAGTAAATGTATTGGGTGGCCTCATTCTTCCTGTTTGGGGAACAATAGAAAAGGCCCTTTCTAAGCAGGCCCGCCTAAGCCATAGGAGGCTACGAGTTGTTCGCATAGAAACTACTACTGTGGATAGCAAACGAATTGTTGGGCTTCTTGTTCCTAATGCTGCTGTTGAAACTGTTCTTCAAGGTTTAGCATGGGTTCAAGAAATTGATGATTGA 3315 0.4341 MKMKVAWPEKHLQIIDHQKYRLDLHTQILLWRHLHWLQCSHRILPMIQSLKIFWKVQRLYHVCKLRPWSMLRHLQHLPGGARAGFFIGDGAGVGKGRTIAGLIWENWHHGRTKALWISIGSDLKFDARRDLDDAGATCIEVHALNKLPYSKLDSKSVGIREGVVFLTYNSLIASSEKGRSRLQQLVQWCGPGFDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLEIQDRLPEARVVYCSATGASEPRNMGYMVRLGLWGDGTSFSEFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEDKMMDMYKKAAEFWAELRVELLSASAFLNDKPNTSQLWRLYWASHQRFFRHMCMSAKVPATVRLAKQALVDEKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSLKGRVRKVAKWQPPSDAETDEESESDSDIESNDSDEEFQICEICTTEEERKKMLQCSCCGKLVHSTCLMPPIGDIVPEEWSCHLCKEKTDEYLLARQAYIAELQKRYDAALERRTKILEIIRSLDLPNNPLDDITDQLGGPDKVAEITGRRGMLVRGPTGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRILFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALVIMYKGIMEQDSLPVVPPGCSSERPDTIQDFITQAKAALVSVGIVRDTVLGNGKDPGRLSGRIIDSDMHEVGRFLNRLLGLPPDIQNGLFELFVSILDLLVRNARIEGNLDTGIVDLKANVIELQGTPKTVHIDQLTAASTVLFTFILDRGITWESASNMLNEKQKDGLGSANDGFYESKREWLGKRHFILAFESSSSASGMYKIVRPPVGESNREMPLSELKSKYRKVLSLEKAQTGWEEEYEVSSKQCMHGPNCKIGSFCTVGRRLQEVNVLGGLILPVWGTIEKALSKQARLSHRRLRVVRIETTTVDSKRIVGLLVPNAAVETVLQGLAWVQEIDD 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00077 1104 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 559 IPR013083 -
Vivi7g00077 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 267 IPR027417 -
Vivi7g00077 1104 Pfam C-terminal domain on Strawberry notch homologue 591 880 IPR026937 -
Vivi7g00077 1104 MobiDBLite consensus disorder prediction 480 496 - -
Vivi7g00077 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 646 751 IPR027417 -
Vivi7g00077 1104 ProSitePatterns Zinc finger PHD-type signature. 503 547 IPR019786 -
Vivi7g00077 1104 Pfam P-loop containing NTP hydrolase pore-1 70 323 IPR039187 -
Vivi7g00077 1104 PANTHER STRAWBERRY NOTCH-RELATED 72 1098 IPR026741 GO:0006355
Vivi7g00077 1104 MobiDBLite consensus disorder prediction 468 496 - -
Vivi7g00077 1104 ProSiteProfiles Zinc finger PHD-type profile. 500 550 IPR019787 -
Vivi7g00077 1104 Pfam PHD-finger 502 550 IPR019787 -
Vivi7g00077 1104 SUPERFAMILY FYVE/PHD zinc finger 492 552 IPR011011 -
Vivi7g00077 1104 SMART PHD_3 502 548 IPR001965 -
Vivi7g00077 1104 Gene3D - 69 253 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00077 Vivi-Chr7 3980400 4015624 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi7g00077 Helicase_C_4 9.9e-106 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00077 K26273 - gmx:100808670 1905.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g00077 7 3980400 4015624 Vivi7g00077 7 3980400 4015624 ECH