Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00076 ATGACCCAACCATCGGTACCATCTCCTCCTCCGCCTCTACCACCACCTCCCCCATCAACCGCTCCACCGTCACAACCTTCCGACGGCGGCGTTCGTGTCCGCTGTGCCGGTTGCCGCATGATCTTGACCGTAGCGCCCGGGCTGACCGAATTCGCTTGCCCGACCTGCCGAATGCCGCAGATGCTTCCGCCGGAACTCATGGCTAGGGTCCACCAAACGGCACCGTCAACATTGCCCTTAACTCCTCCTTCACAGAATTTGCCTGCTCACGGAATTGATCCTACTAAGATCCAGCTTCCTTGCGCTTCCTGTAAGGCAATCCTCAATGTTCCTCATGGCCTCTCGCGGTTCTCTTGTCCTCAATGTAAAGTTGACCTCGCCGTCGATCTCTCTAAGATTAAACAATTCTTGCCTCCGCCTCCGCTTGAAGAAGTTAACGAGGTTGCTGTTGAAGTGGAGAGGGATGAAGATGAAGGTGGCATGGCCGGAGAAACATTTACAGATTATCGACCACCAAAAGTATCGATTGGACCTCCACACCCAGATCCTGTTGTGGAGACATCTTCATTGGCTGCAGTGCAGCCACCGGATCCTACCTATGATCCAAAGTCTAAAGATATTTTGGAAAGTTCAAAGGCTTTATCATGTTTGCAAATTGAGACCTTGGTCTATGCTTGTCAGAGACACCTTCAGCACCTCCCTGGTGGAGCTAGGGCAGGATTCTTTATTGGAGATGGAGCTGGTGTAGGTAAAGGTCGGACAATTGCAGGTCTAATTTGGGAGAACTGGCACCATGGAAGGACAAAAGCATTGTGGATTTCTATTGGTTCAGACTTGAAGTTTGATGCTAGAAGAGACTTGGATGATGCAGGTGCAACATGCATTGAAGTGCATGCTTTGAACAAACTACCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGATCAGGGAGGGAGTTGTCTTCTTGACATACAATAGCCTTATAGCATCTTCAGAGAAAGGTCGTTCTCGTCTTCAGCAGCTTGTGCAGTGGTGTGGACCAGGGTTTGATGGCCTTGTAATTTTTGACGAGTGTCACAAAGCAAAAAATTTGGTCCCTGAAGCTGGTAGTCAGCCAACACGCACTGGAGAAGCAGTGCTTGAAATTCAGGATCGACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCAACTGGTGCATCTGAACCCCGCAATATGGGTTATATGGTTAGACTTGGTCTTTGGGGAGATGGAACTTCTTTCTCTGAGTTCCGTGAATTTTTGGGTGCTCTTGACAGAGGGGGTGTTGGAGCTCTAGAATTAGTTGCCATGGACATGAAAGCAAGGGGGATGTATTTATGCCGGACACTTAGTTATGAGGGTGCTGAGTTTGAAGTTATTGAAGCACCATTAGAAGATAAAATGATGGACATGTATAAAAAGGCAGCAGAATTTTGGGCAGAATTACGAGTAGAATTGCTGTCAGCTAGTGCTTTCCTAAATGATAAACCTAACACTAGTCAACTATGGCGATTGTACTGGGCAAGCCACCAGCGTTTCTTTAGACACATGTGTATGTCTGCTAAAGTCCCTGCTACTGTAAGACTAGCAAAGCAAGCATTAGTAGATGAAAAATGTGTAGTCATTGGTCTTCAGAGTACTGGTGAAGCAAGGACGGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGAGAATTGCTGCTTAAATTTGTGGAAGAAAATTATCCATTACCAGAGAAACCTGAACTCCTCCCAGGAGAGGATGGTGTTAAGGAGCTCCAAAGGAAGAGGCACTCTGCAACCCCTGGTGTTTCATTAAAAGGAAGGGTCAGAAAAGTAGCCAAGTGGCAACCTCCTAGTGATGCAGAAACTGACGAAGAATCTGAAAGTGATTCTGACATTGAATCTAATGACTCTGATGAGGAGTTTCAGATATGTGAAATTTGCACCACTGAGGAGGAAAGGAAAAAAATGTTACAGTGTTCCTGCTGTGGTAAATTAGTCCATTCCACATGCTTGATGCCACCAATTGGTGATATAGTTCCTGAAGAGTGGTCATGCCATTTATGTAAGGAAAAAACAGATGAATATCTTCTAGCAAGGCAGGCCTACATAGCCGAACTCCAGAAGAGATATGATGCAGCCTTGGAACGTAGGACAAAAATATTAGAGATCATTCGTTCTTTGGATCTTCCAAATAATCCCTTGGATGATATTACTGACCAGCTAGGAGGGCCCGACAAAGTTGCAGAAATTACAGGAAGGAGAGGCATGCTTGTGAGGGGCCCTACCGGAAAGGGTGTAACTTACCAGGCTCGTAATACAAAGGATGTCACCATGGAAATGGTTAACATGCACGAAAAGCAGCTTTTTATGGACGGAAAAAAGTTTGTTGCTATTATTTCTGAAGCTGGATCAGCTGGTGTTTCTTTGCAGGCAGATAGGAGAGCGGCAAATCAGAAAAGAAGGGTTCATTTAACGCTAGAGCTTCCGTGGAGTGCTGACCGTGCAATTCAGCAGTTTGGAAGAACTCATAGATCAAATCAAGCTTCAGCACCAGAATACAGGATACTCTTTACTAATCTTGGTGGAGAACGACGATTTGCATCAATTGTTGCGAAGAGATTAGAATCTCTCGGTGCTTTGACTCAAGGCGACCGCAGGGCTGGGCCTTCATTAAGTGCTTATAATTATGATAGTGCTTATGGAAAGAGGGCTCTGGTGATTATGTACAAAGGAATAATGGAGCAGGATTCTCTACCTGTTGTTCCTCCAGGATGTTCATCTGAGAGACCAGATACTATTCAAGATTTCATTACGCAGGCAAAAGCTGCTCTTGTATCTGTTGGGATAGTTAGGGACACAGTTCTTGGAAACGGTAAAGATCCTGGAAGGTTATCTGGTCGAATTATTGATTCAGATATGCACGAAGTTGGACGATTCCTCAACCGGCTTTTGGGTCTACCTCCTGATATTCAAAACGGGCTATTTGAGTTATTTGTGAGCATCTTGGATCTTCTCGTTCGGAATGCACGCATTGAAGGTAACCTCGACACAGGAATAGTTGACTTGAAAGCTAATGTTATAGAACTACAGGGGACTCCAAAGACAGTTCACATTGATCAATTAACTGCGGCTTCAACTGTTCTGTTTACATTCATCTTGGATCGGGGGATCACGTGGGAGTCAGCAAGTAACATGCTGAATGAAAAACAGAAGGATGGGCTTGGCTCAGCCAATGATGGCTTCTATGAGTCCAAGAGGGAATGGTTGGGAAAACGTCATTTCATTTTAGCGTTTGAAAGTTCCAGTTCTGCTTCGGGTATGTATAAGATAGTCCGTCCACCTGTTGGGGAATCAAACCGGGAGATGCCTCTATCTGAATTGAAAAGTAAATACAGAAAAGTTTTATCCTTAGAAAAGGCTCAAACTGGTTGGGAAGAGGAATATGAAGTTTCATCTAAACAGTGCATGCACGGTCCCAATTGTAAGATTGGCAGCTTCTGTACAGTGGGAAGAAGACTACAGGAAGTAAATGTATTGGGTGGCCTCATTCTTCCTGTTTGGGGAACAATAGAAAAGGCCCTTTCTAAGCAGGCCCGCCTAAGCCATAGGAGGCTACGAGTTGTTCGCATAGAAACTACTACTGTGGATAGCAAACGAATTGTTGGGCTTCTTGTTCCTAATGCTGCTGTTGAAACTGTTCTTCAAGGTTTAGCATGGGTTCAAGAAATTGATGATTGA 3783 0.4496 MTQPSVPSPPPPLPPPPPSTAPPSQPSDGGVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMARVHQTAPSTLPLTPPSQNLPAHGIDPTKIQLPCASCKAILNVPHGLSRFSCPQCKVDLAVDLSKIKQFLPPPPLEEVNEVAVEVERDEDEGGMAGETFTDYRPPKVSIGPPHPDPVVETSSLAAVQPPDPTYDPKSKDILESSKALSCLQIETLVYACQRHLQHLPGGARAGFFIGDGAGVGKGRTIAGLIWENWHHGRTKALWISIGSDLKFDARRDLDDAGATCIEVHALNKLPYSKLDSKSVGIREGVVFLTYNSLIASSEKGRSRLQQLVQWCGPGFDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLEIQDRLPEARVVYCSATGASEPRNMGYMVRLGLWGDGTSFSEFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEDKMMDMYKKAAEFWAELRVELLSASAFLNDKPNTSQLWRLYWASHQRFFRHMCMSAKVPATVRLAKQALVDEKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSLKGRVRKVAKWQPPSDAETDEESESDSDIESNDSDEEFQICEICTTEEERKKMLQCSCCGKLVHSTCLMPPIGDIVPEEWSCHLCKEKTDEYLLARQAYIAELQKRYDAALERRTKILEIIRSLDLPNNPLDDITDQLGGPDKVAEITGRRGMLVRGPTGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRILFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALVIMYKGIMEQDSLPVVPPGCSSERPDTIQDFITQAKAALVSVGIVRDTVLGNGKDPGRLSGRIIDSDMHEVGRFLNRLLGLPPDIQNGLFELFVSILDLLVRNARIEGNLDTGIVDLKANVIELQGTPKTVHIDQLTAASTVLFTFILDRGITWESASNMLNEKQKDGLGSANDGFYESKREWLGKRHFILAFESSSSASGMYKIVRPPVGESNREMPLSELKSKYRKVLSLEKAQTGWEEEYEVSSKQCMHGPNCKIGSFCTVGRRLQEVNVLGGLILPVWGTIEKALSKQARLSHRRLRVVRIETTTVDSKRIVGLLVPNAAVETVLQGLAWVQEIDD 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00076 1260 Gene3D - 206 409 IPR027417 -
Vivi7g00076 1260 MobiDBLite consensus disorder prediction 636 652 - -
Vivi7g00076 1260 Pfam P-loop containing NTP hydrolase pore-1 179 479 IPR039187 -
Vivi7g00076 1260 SUPERFAMILY FYVE/PHD zinc finger 648 708 IPR011011 -
Vivi7g00076 1260 MobiDBLite consensus disorder prediction 1 29 - -
Vivi7g00076 1260 Pfam PHD-finger 658 706 IPR019787 -
Vivi7g00076 1260 ProSitePatterns Zinc finger PHD-type signature. 659 703 IPR019786 -
Vivi7g00076 1260 PANTHER STRAWBERRY NOTCH-RELATED 31 1254 IPR026741 GO:0006355
Vivi7g00076 1260 MobiDBLite consensus disorder prediction 1 24 - -
Vivi7g00076 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 423 IPR027417 -
Vivi7g00076 1260 SMART PHD_3 658 704 IPR001965 -
Vivi7g00076 1260 FunFam Protein strawberry notch homolog 2 210 410 - -
Vivi7g00076 1260 Pfam C-terminal domain on Strawberry notch homologue 747 1036 IPR026937 -
Vivi7g00076 1260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 715 IPR013083 -
Vivi7g00076 1260 ProSiteProfiles Zinc finger PHD-type profile. 656 706 IPR019787 -
Vivi7g00076 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 802 907 IPR027417 -
Vivi7g00076 1260 MobiDBLite consensus disorder prediction 624 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00076 Vivi-Chr7 3980400 4016227 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi7g00076 AAA_34 1e-130 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00076 K26273 - gmx:100808670 2222.2