Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00073 ATGTTGATACCGCTTTCAGTTGTTGACGATGTTGCTCTTTTTGATTTAGAACAACAACTTCCTCGTACCCACAACAACAACATGTTACCTGTGTTTGTTCTCTTTGATTCTCGTACCATGTCTCACTACCATCACCCAACAACACCACCTTCTTCTTCGTCTCACCACCACAACAATCTTCCAACAAGATTAATGTCTCACAACCGCAACAACAGCGTTTCATCAACACCAACCTTCTCTGTGGTTGATGAAACTCTTCTCTATCATTCTCATTTGGCCAACAACATTCCAAGAAGATCAAGGATTCATCCAACAACACGGTCATTTAATCATGCTCATCCCCACCACCACGACAATGGTACTACTAGGGCTTCTGCTGCTGTGGTGATGGATGTTCAAGAACATGTTACAACATCAACAGGAGATGCAGAATCCATCTGTTCCATTTGTCTTCTTGACTTGTCTAATGCTTCTTCCACACCAATTCGGTTGCGCTGCTCTCATGTTTTTCATACTCACTGCATTCAGAAATGGATTAACATTCGAAAAACCTGTCCTCTCTGCCGCGCCGATGTTTAA 579 0.4266 MLIPLSVVDDVALFDLEQQLPRTHNNNMLPVFVLFDSRTMSHYHHPTTPPSSSSHHHNNLPTRLMSHNRNNSVSSTPTFSVVDETLLYHSHLANNIPRRSRIHPTTRSFNHAHPHHHDNGTTRASAAVVMDVQEHVTTSTGDAESICSICLLDLSNASSTPIRLRCSHVFHTHCIQKWINIRKTCPLCRADV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00073 192 SMART ring_2 147 188 IPR001841 -
Vivi7g00073 192 MobiDBLite consensus disorder prediction 43 62 - -
Vivi7g00073 192 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Vivi7g00073 192 SUPERFAMILY RING/U-box 140 192 - -
Vivi7g00073 192 Pfam Ring finger domain 147 189 IPR001841 -
Vivi7g00073 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 192 IPR013083 -
Vivi7g00073 192 PANTHER TARGET OF ERK KINASE MPK-1 75 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00073 Vivi-Chr7 3957413 3957991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00073 141 192 C3H Transcription Factor Family AT5G47610 38.462 4.19e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00073 - K19038 vvo:131593264 339.732