Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00068 ATGAGTTATACAAGTAGAGATGATGCGTCTGGTTTAGCCACTGCTGTGAAAAATAATCTGTGTGCTCAACTTTGGCATGCATGTTGTGGATTTGTATACATCCCCAAGATTGGGGAAAAGGTTTTCTACTTCCCTCAAGGACACTTAGAACAGGTGACAATATTTCAACATCAACAAGATCATAACATGGAAATTCCTAACTATCATTTGCCCTCTAAAATTTTATGCATAGTTATGGGTGTTGAGTTAAAGGCAAAAGTTGACACAGATGAAATTTTCACTCTACTTACATTATTCCCATTGCCAGAGCAGCAAGAAATTATTTTAGAGGATAATCATGCAATTCAGAGTCCTAGTGAACTGTACTCTTTCAATAAGATTCTCACTTCAACAGAAATAAGTACACTTGGTGGACTTTATATTCCAAAGGAACATGCTGAGAGATGCTTTCCTCCACTGGATATGACCCTTAAACCACCAATGCATGATCTAGTGGCAAAGGACTTGCATGGAAATGAGTGGAATTTTCGACATATTTATAGTAGTTATGAGAAAAAACACATGCTTATTAATGGTTGGAGCACATTCGTAAACTCAAAAAATCTTGCTCCTGGAGATTCATGCATTTTTGTCAGTGGTGAGAATGGTGAATTTGGTATTGGGATTCGTCGAGATATGGAACAACATAGCAATATATGCTGCACAACATCGTCTCGACAATCTAGTCAGAAGATGCAGCTTCCACCATTGGTTGCTGCTTATCATGCTGTTTCTATAGGAACTTTGTTCCATGTCCAGTACTACCCTTGGATTACTCCCTTTGAATTTATGATTCCTCTGAAAACTTATGTTGAATCAATTGAAAAAGATTACTCAATTGGAACAAGGGTACAACGGTTGTCTGAAGTGGGAGGATGTGCAAAAAGATATGGCACAATAGTTGGTAATGAAGATATTGATCCCATTAACTGGCCTGCTTCTGATTGGAGATCTCTTAAGGTTCAATGGGATTCTATTCCAAATACTTTTACACATATTGAAAGGGTTTGTCCATGGTGGGTTGAGCCCTTGGAATCTTCAAAGATTAAGGAAATCCCTATTCTTCCTTTACCAAAAAAAATAGATGAATATGACTCATTATTGCTTGGTTTTAATGGCTTTGCTCATGAGGATACATTTGGAAGTTCATCCAAACCTAAATATCACAAAGTAGATATGGACTTGCAAGGTCAAGATTACAATAACAGAAAGCATAAAAAATCAAAATTTTCCAATTTTGGTTTCTTTATATTTCTTAGCTTTTTTATATTTGTAATTTTTTTCCTTTGTCCTCTTATGTGA 1341 0.3609 MSYTSRDDASGLATAVKNNLCAQLWHACCGFVYIPKIGEKVFYFPQGHLEQVTIFQHQQDHNMEIPNYHLPSKILCIVMGVELKAKVDTDEIFTLLTLFPLPEQQEIILEDNHAIQSPSELYSFNKILTSTEISTLGGLYIPKEHAERCFPPLDMTLKPPMHDLVAKDLHGNEWNFRHIYSSYEKKHMLINGWSTFVNSKNLAPGDSCIFVSGENGEFGIGIRRDMEQHSNICCTTSSRQSSQKMQLPPLVAAYHAVSIGTLFHVQYYPWITPFEFMIPLKTYVESIEKDYSIGTRVQRLSEVGGCAKRYGTIVGNEDIDPINWPASDWRSLKVQWDSIPNTFTHIERVCPWWVEPLESSKIKEIPILPLPKKIDEYDSLLLGFNGFAHEDTFGSSSKPKYHKVDMDLQGQDYNNRKHKKSKFSNFGFFIFLSFFIFVIFFLCPLM 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00068 446 Pfam B3 DNA binding domain 124 224 IPR003340 GO:0003677
Vivi7g00068 446 Gene3D - 121 226 IPR015300 -
Vivi7g00068 446 Pfam Auxin response factor 253 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi7g00068 446 CDD B3_DNA 123 224 IPR003340 GO:0003677
Vivi7g00068 446 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Vivi7g00068 446 Gene3D - 290 362 - -
Vivi7g00068 446 SUPERFAMILY DNA-binding pseudobarrel domain 119 224 IPR015300 -
Vivi7g00068 446 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 377 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi7g00068 446 SMART B3_2 124 226 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00068 Vivi-Chr7 3439030 3449958 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00068 2 419 B3 DNA Binding Superfamily AT5G62000 42.130 4.66e-105 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi7g00068 B3 3.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00068 - - psat:127135586 775.007