Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00064 ATGGAAATTCCTAACTATCATTTGCCCTCTAAAATTTTATGCATAGTTATGGGTGTTGAGTTAAAGGCAAAAGTTGACACAGATGAAATTTTCACTCTACTTACATTATTCCCATTGCCAGAGCAACAAGAAATTATTTTAGAGGATAATCATGCAATTCAGAGTCCTAGTGAACTGTACTCTTTCAATAAGATTCTCACTTCAACAGAAATAAGTACACTTGGTCGACTTTATATTCCAAAGGAACATGCTGAGAGATGCTTTCCTCCACTGGATATGACCCTTAAACCACCAATGCATGATCTAGTGGCAAAGGACTTGCATGGAAATGAGTGGAATTTTCGACATATTTATAGTAGTTATGAGAAAAAACACATGCTTACTAATGGTTGGAGCACATTCGTAAACTCAAAAAATCTTGCTCCTGGAGATTCATGCATTTTTGTCAGTGGTGAGAATGGTGAATTTGGTATTGGGATTCGTCGAGATATGGAACAACATAGCAATATATGCTGCACAACATCGTCTCGACAATCTAGTCAGAAGATGCAACTTCCACCATTGGTTGCTGCTTATCATGCTATTTCTATAGGAACTTTGTTCCATGTCCAGTACTACCCTTGGTGA 627 0.3748 MEIPNYHLPSKILCIVMGVELKAKVDTDEIFTLLTLFPLPEQQEIILEDNHAIQSPSELYSFNKILTSTEISTLGRLYIPKEHAERCFPPLDMTLKPPMHDLVAKDLHGNEWNFRHIYSSYEKKHMLTNGWSTFVNSKNLAPGDSCIFVSGENGEFGIGIRRDMEQHSNICCTTSSRQSSQKMQLPPLVAAYHAISIGTLFHVQYYPW 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00064 208 CDD B3_DNA 61 162 IPR003340 GO:0003677
Vivi7g00064 208 Gene3D - 59 164 IPR015300 -
Vivi7g00064 208 ProSiteProfiles B3 DNA-binding domain profile. 62 164 IPR003340 GO:0003677
Vivi7g00064 208 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 207 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi7g00064 208 Pfam B3 DNA binding domain 62 162 IPR003340 GO:0003677
Vivi7g00064 208 SUPERFAMILY DNA-binding pseudobarrel domain 57 162 IPR015300 -
Vivi7g00064 208 SMART B3_2 62 164 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00064 Vivi-Chr7 3369791 3378959 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00064 2 207 B3 DNA Binding Superfamily AT5G62000 47.596 5.66e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi7g00064 B3 1.3e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00064 - - vvo:131616998 434.876