Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00049 ATGTTGATACCGCTTTCAGTTGTTGACGATGTTGCTCTTTTTGATTTAGAACAACAACATCCTCGTACCCACAACAACAACAACATGTTACCTGTCTTTGTTCTCTTTGATTCTCGTACCATGTCTCACTACCATCACCCAACAACACCACCTTCTTCTTCGTCTCACCACCACAACAATCTTCCAACAAGATTAATGTCTCACAACCGCAACAACAGCGTTTCATCAACACCAACCTTCTCTGTGGTTGATGAAACTCTTCTCTATCATTCTCATTTGGCCAACAACATTCCAAGAAGATCAAGGATTCATCCAACAACACAGTCATTTAATCATGGTCATCCCCACCACCACAACAATGGTACTACTAGGGCTTCTGCTGCTGTGGTGATGGATGTTCAAGAACATGTTACAACATCAACAGAAGATGCTGTAGAATCCATCTGCTCCATTTGTCTTCTTGACTTGCCTAATGCTTCTTCCACGCCAATTCGGTTGCGCTGCTCTCATGTTTTTCATACTCACTGCATTCAGAAATGGATTAACATTCGAAAAAACTGTCCTCTCTGTCGCGCCAATGTTTAA 585 0.4205 MLIPLSVVDDVALFDLEQQHPRTHNNNNMLPVFVLFDSRTMSHYHHPTTPPSSSSHHHNNLPTRLMSHNRNNSVSSTPTFSVVDETLLYHSHLANNIPRRSRIHPTTQSFNHGHPHHHNNGTTRASAAVVMDVQEHVTTSTEDAVESICSICLLDLPNASSTPIRLRCSHVFHTHCIQKWINIRKNCPLCRANV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00049 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 194 IPR013083 -
Vivi7g00049 194 SUPERFAMILY RING/U-box 134 194 - -
Vivi7g00049 194 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Vivi7g00049 194 SMART ring_2 149 190 IPR001841 -
Vivi7g00049 194 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 85 194 IPR044675 -
Vivi7g00049 194 Pfam Ring finger domain 149 191 IPR001841 -
Vivi7g00049 194 MobiDBLite consensus disorder prediction 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00049 Vivi-Chr7 2625634 2626218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00049 144 194 C3H Transcription Factor Family AT5G47610 37.255 1.68e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00049 - K16281 vvo:131593264 345.125