Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi799g00005 | ATGTCACAAGGTTCTGAGCAATGGAAATGGTCTGAAATGCAAGGCATTGAGATGCTTTCATCTTCTCCTTCAACAACTTCAACACCAGCATTGGAGTTGGAAAGAGAAGAATCCAAGGAACAAATGGAACTGGAAGGGGAAAGTTCATTGCCCAACAACAAAAGCTGTGATTTTTCTAATGGAAATGAGAAGATTAAGGATGTTCCATCTGTTGGGTTTGGTGAGCTTTTCAGATTTGCTGATGGGTTGGATTATATTCTCATGACAGTTGGAACTCTTGGAGCTATTGTACATGGTTGTTCATTGCCACTTTTTCTTCGGTTCTTTGCTGATCTTGTTAACTCTTTTGGTTCTAATGCTAATGATTTGGACAAGATGACCCAAGAAGTTGTTAAGTATGCGTTTTACTTTCTGGTTGTTGGTGCTGCTATTTGGGCATCTTCATGGGCAGAGATTTCTTGTTGGATGTGGACTGGTGAGAGACAATCAACAAGGATGAGAATTAAGTATCTTGAAGCTGCTTTGGATCAAGATATTCAATTCTTTGACACTGAAGTTCGAACTTCCGATGTTGTTTTTGCGATCAACACTGATGCTGTTATGGTACAAGATGCCATAAGTGAGAAGTTAGGTAATTTTGTTCACTACATGGCTACATTTGTTTCTGGATTTGCGGTTGGTTTTAGTGCTGTTTGGCAATTAGCATTTGTTACACTTGCTGTTGTGCCTATGATAGCTGTAATAGGAGGCATTCATACTACCACTTTGGCTAAGTTATCTGGTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGACTGTTGTTCAAATTAGAGTGGTGTTAGCATATGTTGGAGAGACAAAAGCACTACAAGGCTATTCATCTACTCTAAGCGTTGCTCAAAAGATTGGATACCGGACTGGACTTGCAAAGGGAATCGGATTAGGTGCTACTTACTTTGTTGTTTTCTGCTGCTATGCACTTTTGTTATGGTATGGAGGCTATTTGGTCAGGCATCACTACACTAATGGAGGACTTGCAATTGCTACCATGTTTGCTGTCATGATCGGTGGATTGGCTTTAGGCCAGTCTGCACCAAGCATGGCTGCCTTTACGAAGGCCAGAGTTGCTGCTGCGAAAATTTTCCGTGTGATAGATCACAAACCTTGTATAGACAAAAATAGTGGATCAGGATTGGAGTTAGAGACTGTGACAGGACTAGTGGAGCTTAAAAATGTTGACTTTTCATATCCATCAAGACCTGAAGTTCAAATCCTTCACAATTTCTCCTTGAATGTTCCTTCTGGCAAGACCATAGCATTGGTTGGAAGTAGCGGCTCTGGAAAAAGCACAGTTGTGTCCCTCATTGAGAGATTCTATGACCCTTCTTCTGGAGAAGTTCTGTTAGATGGACATGATGTTAAGACATTGAAGCTTAAATGGTTGAGACAACAGATAGGACTTGTGAGCCAAGAACCGGCTTTATTCGCCACCACAATTAAAGAAAATATACTGTTGGGTAGACCCGATGCAGATCAGGTCGAGATCGAAGAAGCTGCAAGAGTAGCTAATGCTCATTCATTCATCTTCAAACTTCCTCAAGGTTATGAAACACAGGTAGGGGAGAGAGGGTTGCAACTATCAGGGGGACAAAAGCAGCGAATAGCGATTGCAAGGGCAATGCTGAAAAACCCGGCAATTCTTCTCCTAGATGAGGCAACGAGTGCATTGGACTCCGAGTCAGAAAAGCTGGTTCAAGAAGCTCTTGATAGGTTCATGATTGGTAGAACAACTCTTGTGATTGCACATCGACTATCTACTATTCGCAAAGCTGACCTTGTCGCTGTACTTCAGCAAGGAAGTGTTTCTGAAATCGGAACTCACGACGAGCTCTTTGCTAAAGGGGAAAATGGAGTTTATGCCAAACTTATCAGAATGCAGGAGACAGCAAATGAAAGTTCAACGAGCAATGCCAGAAAAAGTAGTGCAAGGCCTTCTAGTGCTAGGAATTCTGTAAGCTCACCGATAATTACTCGGAATTCTTCTTATGGCGGCCGATCACCATACTCGAGGAGGTTTTCTGATTTCTCCACATCTGATTTTAATCTCTCCCATGATGCATCGTATCCAAATTACAAGCTTGAGAAGCTTGCCTTCAAAGAGCAAGCGAGTTCCTTCTGGCGACTTGCGAAAATGAACTCTCCCGAATGGCTATATGCATTGATTGGTTCTATAGGCTCTATTGTTTGTGGATCCCTTAGTGCATTCTTTGCTTATGTTCTCAGTGCAGTCCTCAGTGTCTATTACAATCCAGACCATAAGCACATGATTAGAGAAATTGAAAAATACTGTTACTTGCTGATTGGACTTTCGTCGGCAGCACTTTTATTCAATACATTGCAGCACTTCTTCTGGGATATTGTCGGTGAAAATCTTACTAAACGGGTGAGGGAGAAAATGTTGAGTGTGGTACTTAAAAATGAAATGGCGTGGTTTGATCGAGAGGAAAATGAGAGTGCTAGGATTGCAGCAAGGCTAGCTCTTGATGCCAACAATGTTAGATCTGCTATTGGAGATCGGATTTCGGTAATCGTGCAGAACACTGCACTTATGCTTGTTGCTTGTACTGCAGGGTTTGTATTGCAGTGGCGGCTTGCCCTCGTTCTCGTTGCCGTCTTCCCGGTTGTTGTTGCAGCCACTGTCTTACAGAAAATGTTCATGTCTGGTTTCTCTGGAGACTTGGAAGCTGCTCATGCCAAGGCCACACAATTAGCTGGTGAGGCTATTGCGAATGTAAGGACCGTTGCTGCCTTTAATTCGGAAAAGAAAATTGTTGGCCTTTTCGCTTCGAACCTTGAAACTCCATTACGGCGTTGCTTTTGGAAGGGACAGATTTCTGGAATTGGTTATGGGATAGCTCAGTTTGCACTCTATGCTTCCTATGCTCTTGGTCTTTGGTATGCTTCATGGCTTGTGAAGCACGGAATCTCCGATTTCTCTAAAACAATCCGAGTATTTATGGTCCTCATGGTCTCTGCTAATGGAGCTGCCGAAACTTTAACTTTGGCTCCTGACTTCATCAAGGGAGGTCGGGCTATGAGGTCGGTTTTCGATCTCCTTGACCGTAGAACTGAAATTGAGCCAGATGATCCAGATGCCGCCCACGTTCCCGACTCTCTTCGCGGTGAAGTAGAACTCAAGCATGTTGACTTCTCTTATCCCAGCCGACCAGATATGCCGGTTTTCCGCGACCTTAGTCTTCGTGCAAAGGCAGGTAAAACTCTTGCCCTTGTAGGCCCTAGTGGATGTGGTAAGAGCTCGGTTATTGCACTTATACAAAGATTCTACGATCCAACGTCCGGCCGAGTCACGATCGATGGAAAGGACATACGAAAATACAATCTCAAGTCCCTTAGAAAACACATCGCAGTGGTTCCCCAAGAGCCATGCTTATTCGCTACTACTATCTACGAAAACATTGCTTATGGACACGACTCAGCTTCTGAAGCCGAGATTATCGAAGCCGCGACTCTCGCCAATGCTCACAAGTTCATATCTTCTCTCCCCAATGGATACAAAACAAATGTCGGCGAACGAGGAGTTCAACTCTCCGGTGGACAAAAGCAAAGAATAGCAATTGCTCGAGCTTTTATACGGAAAGCAGAACTCATGCTTCTCGATGAAGCAACAAGTGCACTTGATGCTGAATCTGAACGGTCTGTTCAAGAGGCCCTCGACCGCGCCTGCTCAGGAAAAACTACTATCATTGTTGCACACAGGCTATCAACTATTAGGAATGCCAATCTCATTGCAGTGATTGATGATGGGAAAGTTGAGGAACAAGGCTCACATTCACATTTGTTGAAGAATCACCCGGATGGGATCTACGCGCGCATGATTCAACTGCAAAGGTTGATGAATAACCAAGTCGTTGGGACCGCGTCGAGTTCAGGTTGTTCAGCAAGAACAAAAGATGATGAATCTGAATGCTAG | 4005 | 0.437 | MSQGSEQWKWSEMQGIEMLSSSPSTTSTPALELEREESKEQMELEGESSLPNNKSCDFSNGNEKIKDVPSVGFGELFRFADGLDYILMTVGTLGAIVHGCSLPLFLRFFADLVNSFGSNANDLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIKYLEAALDQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFVHYMATFVSGFAVGFSAVWQLAFVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALSQAGNIVEQTVVQIRVVLAYVGETKALQGYSSTLSVAQKIGYRTGLAKGIGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGLALGQSAPSMAAFTKARVAAAKIFRVIDHKPCIDKNSGSGLELETVTGLVELKNVDFSYPSRPEVQILHNFSLNVPSGKTIALVGSSGSGKSTVVSLIERFYDPSSGEVLLDGHDVKTLKLKWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEIEEAARVANAHSFIFKLPQGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQETANESSTSNARKSSARPSSARNSVSSPIITRNSSYGGRSPYSRRFSDFSTSDFNLSHDASYPNYKLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSIVCGSLSAFFAYVLSAVLSVYYNPDHKHMIREIEKYCYLLIGLSSAALLFNTLQHFFWDIVGENLTKRVREKMLSVVLKNEMAWFDREENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMSGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSEKKIVGLFASNLETPLRRCFWKGQISGIGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDPDAAHVPDSLRGEVELKHVDFSYPSRPDMPVFRDLSLRAKAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVTIDGKDIRKYNLKSLRKHIAVVPQEPCLFATTIYENIAYGHDSASEAEIIEAATLANAHKFISSLPNGYKTNVGERGVQLSGGQKQRIAIARAFIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIIVAHRLSTIRNANLIAVIDDGKVEEQGSHSHLLKNHPDGIYARMIQLQRLMNNQVVGTASSSGCSARTKDDESEC | 1334 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi799g00005 | 1334 | ProSitePatterns | ABC transporters family signature. | 551 | 565 | IPR017871 | GO:0005524|GO:0016887 | |
| Vivi799g00005 | 1334 | MobiDBLite | consensus disorder prediction | 14 | 58 | - | - | |
| Vivi799g00005 | 1334 | Gene3D | - | 410 | 675 | IPR027417 | - | |
| Vivi799g00005 | 1334 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 404 | 651 | IPR027417 | - | |
| Vivi799g00005 | 1334 | PANTHER | ABC TRANSPORTER B FAMILY | 59 | 796 | IPR039421 | - | |
| Vivi799g00005 | 1334 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 745 | 1032 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Vivi799g00005 | 1334 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 412 | 648 | IPR003439 | GO:0005524 | |
| Vivi799g00005 | 1334 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 88 | 385 | - | - | |
| Vivi799g00005 | 1334 | SMART | AAA_5 | 439 | 625 | IPR003593 | GO:0016887 | |
| Vivi799g00005 | 1334 | SMART | AAA_5 | 1095 | 1287 | IPR003593 | GO:0016887 | |
| Vivi799g00005 | 1334 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 90 | 377 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Vivi799g00005 | 1334 | Gene3D | - | 1058 | 1315 | IPR027417 | - | |
| Vivi799g00005 | 1334 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1068 | 1304 | IPR003439 | GO:0005524 | |
| Vivi799g00005 | 1334 | Pfam | ABC transporter | 1087 | 1235 | IPR003439 | GO:0005524 | |
| Vivi799g00005 | 1334 | CDD | ABC_MTABC3_MDL1_MDL2 | 1068 | 1307 | - | - | |
| Vivi799g00005 | 1334 | ProSitePatterns | ABC transporters family signature. | 1207 | 1221 | IPR017871 | GO:0005524|GO:0016887 | |
| Vivi799g00005 | 1334 | FunFam | ABC transporter B family member 1 | 402 | 652 | - | - | |
| Vivi799g00005 | 1334 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1059 | 1307 | IPR027417 | - | |
| Vivi799g00005 | 1334 | SUPERFAMILY | ABC transporter transmembrane region | 76 | 393 | IPR036640 | GO:0005524|GO:0016020 | |
| Vivi799g00005 | 1334 | MobiDBLite | consensus disorder prediction | 14 | 31 | - | - | |
| Vivi799g00005 | 1334 | FunFam | ABC transporter B family member 1 | 1058 | 1308 | - | - | |
| Vivi799g00005 | 1334 | SUPERFAMILY | ABC transporter transmembrane region | 732 | 1052 | IPR036640 | GO:0005524|GO:0016020 | |
| Vivi799g00005 | 1334 | MobiDBLite | consensus disorder prediction | 654 | 689 | - | - | |
| Vivi799g00005 | 1334 | CDD | ABC_MTABC3_MDL1_MDL2 | 412 | 651 | - | - | |
| Vivi799g00005 | 1334 | Pfam | ABC transporter transmembrane region | 746 | 1015 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Vivi799g00005 | 1334 | Pfam | ABC transporter transmembrane region | 89 | 361 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Vivi799g00005 | 1334 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 734 | 1050 | - | - | |
| Vivi799g00005 | 1334 | FunFam | ABC transporter B family member 1 | 75 | 409 | - | - | |
| Vivi799g00005 | 1334 | FunFam | ABC transporter B family member 19 | 1034 | 1056 | - | - | |
| Vivi799g00005 | 1334 | Gene3D | ABC transporter type 1, transmembrane domain | 135 | 1041 | IPR036640 | GO:0005524|GO:0016020 | |
| Vivi799g00005 | 1334 | FunFam | ABC transporter B family member 1 | 724 | 1033 | - | - | |
| Vivi799g00005 | 1334 | Pfam | ABC transporter | 430 | 579 | IPR003439 | GO:0005524 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi799g00005 | 64 | 1332 | Calmodulin-binding Proteins | AT2G36910 | 86.535 | 0.0 | 2255 |