Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi795g00033 ATGCCTGATAACATGAGCATATCTGTTAATGGACAATCTCAAGTCCCTCCTGGATTCAGGTTTCATCCAACTGAAGAAGAACTTCTTCAATACTATTTGAGGAAAAAAGTCTCTTATGAGAAGATTGATCTTGATGTTATTCGTGATGTTGATCTCAACAAGCTTGAACCATGGGACATACAAGAGAAATGCAAAATAGGAACAACTCCACAAAATGATTGGTACTTCTTCAGTCACAAAGATAAGAAGTATCCAACCGGGACGCGAACCAATCGCGCCACGGCTGCTGGTTTCTGGAAAGCCACCGGGCGCGACAAAGTTATATATAGCAATGGAAAAAGGATTGGAATGAGAAAGACTCTTGTTTTTTACAAGGGTCGCGCCCCTCATGGCCAAAAATCCGATTGGATCATGCACGAGTATAGACTAGACGATAACACCACCACCAGCGACGCTAATTTGGTGTCGAATGTGATTGGTGATGGTGGTCAAGAAGAAGGATGGGTGGTGTGTAGGATATTCAAGAAGAAGAATCATCTCAAAACCCTAGACAGCCCATTAGGCTCTGGAGAGGGAAGAAGAAGCCATCATTTGTTTGATAATTGTGATGAAGGAGCTTTGGAGCAAATACTTCAACAAATGGGAAGAGGTGGTTGCAAGGAAGAGAATTATGAAGCAAATTACAATAACAATAACTATGGAAGGTTTACAAGGCCTTTTGAAACTAGCCTCAACAACAATGGTGGTTATAATAATGAAAGGTTCATGAAACTTCCAAGTTTAGAGAGTCCAAAATCAACAAGCATGGAGAACAATGAGAACAACAATGAAGGGTACCATGCAATTATTCAAGTGGATGTGGCTAATGAAAATGAAGGGTCATTCACTAATCATCATCATCATCAACACCATAACAACATGGTTAATAATCCATTAGAAGCATCATCATCATCAATGGTTATAGCCTCATGTGGTGATGGTGGTCTTACTAATTGGGTAGCTTTTGATAGGCTTGTTGCTTCTCAATTGAATGGACAAACTGAAACTTCTAGGCAATTGGCTTGCTTCAATGACCCCACAATGGGATATTGCACTAATGATCATGATCTTCAACTTCCAACCCTTAGATCTTCTTCATCAACTTCATCACTATCGACACACGCTAGAGCCACTACTTCTACTACCGCTACTACTACTACTTACATTAGTCCCTCGCATGATTATGCAAGTGAGATTGATCTTTGGAACTTCGCCCGATCAACTTCTTCATTGTTGTCATCTTCTGAACCACTCTGCCATGTCTCAAATACGTCAGCGTGA 1320 0.4068 MPDNMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTTSDANLVSNVIGDGGQEEGWVVCRIFKKKNHLKTLDSPLGSGEGRRSHHLFDNCDEGALEQILQQMGRGGCKEENYEANYNNNNYGRFTRPFETSLNNNGGYNNERFMKLPSLESPKSTSMENNENNNEGYHAIIQVDVANENEGSFTNHHHHQHHNNMVNNPLEASSSSMVIASCGDGGLTNWVAFDRLVASQLNGQTETSRQLACFNDPTMGYCTNDHDLQLPTLRSSSSTSSLSTHARATTSTTATTTTYISPSHDYASEIDLWNFARSTSSLLSSSEPLCHVSNTSA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi795g00033 439 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Vivi795g00033 439 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Vivi795g00033 439 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 297 - -
Vivi795g00033 439 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Vivi795g00033 439 MobiDBLite consensus disorder prediction 376 395 - -
Vivi795g00033 439 SUPERFAMILY NAC domain 9 176 IPR036093 GO:0003677|GO:0006355
Vivi795g00033 439 FunFam NAC domain-containing protein 24 180 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi795g00033 1 439 NAC Transcription Factor Family AT2G46770 52.876 7.94e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi795g00033 NAM 4.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi795g00033 - - ahf:112734309 603.594