Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi795g00002 ATGGAGAGGCTTCAAGCACCCATCAATTCTTCTTTCTTTGGTGAAGTGAATTGTTTAGACCAAACATTTCTTGACACAGAAAGTTTAAGGTTTGAGGAAGATGAACAGTTTCTGATATCAAGCTTAGAAGACAACATGCCATTTCTTCAAATGCTTCAAAGTGTTGAATCTCCACAGTTGATATATCCTCTAAAAGAACCAAACTTTCAAACACTTTTGAGGCTACAACATATGAAGAAACCATGGGAAGAAGACATAGCCTTTATTCCTAGGATGGATTCACTACAACAAGCTCAAACAACATTGGAATTTGAGAGCTGTGTTACACATGATGTTCTAGAGATGCAGTCACCAGTGAAATCAGAAAGCTATGAACTTCAACACAAAGTTTCAGCTTCATGCATTGAGAAATTGAGCTATGAGTGTAACCAAGAACAAACAAAAACATGTTCCAAATCTCAGCTTGTGACAAGGGAAAAGAGGAAGAGGAAAAGAACAAGACCGGTTAAGAATAAGGAAGATGTTGAGAATCAAAGGATGACACACATTGCTGTTGAAAGAAATAGGAGAAGACAAATGAATGACCATCTTAGTGTTCTTAGGTCTCTTATGCCATCTTCTTATATTCAAAGGGGTGACCAAGCTTCAATAATTGGAGGAGCAATAGATTTTGTGAAGGAGTTAGAGCAATTGCTTGAATCTCTTGAAGTACAAAAAAGGATAAAAAAGAATGAAGAATTTGGTTCAACCTCATCATCCTCACCACCTAGTTATGGAACAAAGTTATCATGTTGTGAAGAAAATGAGGTGAAGGCAGAAAACAAATCAGAAGCAGCAGATATAAAAGTGACATTGATTCAAACTCATGTGAACTTGAAAATAGAGTGCAAAAGAAGATGTGGTCAATTGATAAAAGTTATTGTTGCTTTGGAGAATCTTAGGCTAACTATTCTTCACCTTAACATCACATCCTTTGAGTCTTCTGTACTTTACTCCCTCAATCTCAAGATTGAGGAAGATTGTAAGCTAGGCACAGCAAATGACATAGCAGAAGCAGTTCATGAAATATTCAACTACATTAATGGTAACTAG 1092 0.3636 MERLQAPINSSFFGEVNCLDQTFLDTESLRFEEDEQFLISSLEDNMPFLQMLQSVESPQLIYPLKEPNFQTLLRLQHMKKPWEEDIAFIPRMDSLQQAQTTLEFESCVTHDVLEMQSPVKSESYELQHKVSASCIEKLSYECNQEQTKTCSKSQLVTREKRKRKRTRPVKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPSSYIQRGDQASIIGGAIDFVKELEQLLESLEVQKRIKKNEEFGSTSSSSPPSYGTKLSCCEENEVKAENKSEAADIKVTLIQTHVNLKIECKRRCGQLIKVIVALENLRLTILHLNITSFESSVLYSLNLKIEEDCKLGTANDIAEAVHEIFNYINGN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi795g00002 363 Pfam Helix-loop-helix DNA-binding domain 178 229 IPR011598 GO:0046983
Vivi795g00002 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 246 IPR036638 GO:0046983
Vivi795g00002 363 SMART finulus 183 234 IPR011598 GO:0046983
Vivi795g00002 363 MobiDBLite consensus disorder prediction 153 173 - -
Vivi795g00002 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 228 IPR011598 GO:0046983
Vivi795g00002 363 PANTHER TRANSCRIPTION FACTOR FAMA 107 357 IPR044283 GO:0003700|GO:0010052
Vivi795g00002 363 Coils Coil 225 245 - -
Vivi795g00002 363 Gene3D - 169 245 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi795g00002 40 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 41.369 1.69e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi795g00002 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi795g00002 - - gmx:100789928 522.316