Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi78g00119 ATGGCAGATTCCGAGAGTCCAGCTGGCGGTAACCACGACCATGATAGTGGCGGCGAACAAAGTCCACGTGGCTCTTCTTCCGCCGCGCGTGAGCAAGATCGTTTCTTGCCTATAGCTAACATTAGCAGGATCATGAAAAAGGCTTTGCCTTCCAATGGCAAGATTGCTAAGGATGCTAAAGATACAATGCAGGAATGTGTCTCCGAATTCATCAGTTTTATTACCAGCGAGGCGAGTGAGAAATGTCAGAAAGAGAAGAGAAAGACCATTAATGGAGATGATTTGTTATGGGCAATGGCTACTTTAGGATTTGAAGACTATATAGAACCACTTAAGGTGTACCTAGCAAGATACAGAGAGTTAGAGGGTGACAGTAAAGGAACAACTGTTAGAGGTTGTGATGGATCTGGTAGACGAGATCAAGTTAGCCCTGGAGGACAAAATTCGCAGCTTGTTCATCAGGGTTCTATGAACTATATGGGTTCTCAGGTGCATCCACAACATCTGGTTTTGCCTTCCATGCAAAACCATGAATAG 537 0.4469 MADSESPAGGNHDHDSGGEQSPRGSSSAAREQDRFLPIANISRIMKKALPSNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYRELEGDSKGTTVRGCDGSGRRDQVSPGGQNSQLVHQGSMNYMGSQVHPQHLVLPSMQNHE 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi78g00119 178 FunFam Nuclear transcription factor Y subunit B-3 24 148 - -
Vivi78g00119 178 MobiDBLite consensus disorder prediction 125 153 - -
Vivi78g00119 178 Gene3D Histone, subunit A 22 154 IPR009072 GO:0046982
Vivi78g00119 178 MobiDBLite consensus disorder prediction 1 32 - -
Vivi78g00119 178 ProSitePatterns NF-YB/HAP3 subunit signature. 66 82 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vivi78g00119 178 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
Vivi78g00119 178 SUPERFAMILY Histone-fold 32 129 IPR009072 GO:0046982
Vivi78g00119 178 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 148 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi78g00119 178 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Vivi78g00119 178 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Vivi78g00119 178 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi78g00119 1 172 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.816 7.77e-77 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi78g00119 CBFD_NFYB_HMF 4.6e-29 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi78g00119 K08065 - gmx:100779577 285.034