Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi78g00108 ATGTCTCAGAGAATTCCCATCGGAAATGCAGAAGACAAAATTTTAAAGCAAAAAATGATTGAAGAATCAGAGGCATCACAAAAAAATGAATCAAAGAATGTAATAACATCCTCTGAAGCTGATTCTGAGAAGGGCAGAATGGTAGCAGTCCCAGAGACAATACTGTATAATGAACCCAAGGAAGCGAAAATATTTCCTTGTCTTTTTTGTGACAAGACATTTTCGAGTTCACAAGCTCTTGGAGGGCATCAAAATGCTCATAAGGAAGAACGCGCCTTAAAAAAAATGGAGCAAAAAAGAATAGAGGAAGAAATGGAGGCCGCCATGAGGTATAGACCTATTTTTCCATACTGTTATCCTTATTCAAACCCTATTCACCATCAAGCATATCCCAATTTATGCGGCAACCTGCAAGCCCTAGTTGGCACTCAGATGAACAATGTAATTTCTACCCGGCTTGATTCTCCATTTATGATGCAAGTTCCAAAGCCACCACTACACCTTGAGATGATTAATTTTTTAGGTGAAAATCAAACTCTTGCATTGCCAATAACTCAAAGGGCAAACCCTGTAGATGATGATGGAGTGGAATTGAGACTTTTTACATCTGGTGAGGGTGTCGAAAGAAATTCAAATGCTCAATTTCTTTCTAATGATCTTACAACTGAAACTCGTGATTTATTTGGAGGAAGCCATGTTCTAGCAGAGACTAATGCGTCTTCATCATCAACAACTGAATCAACATCCGAGGAATTTGATTTGAATCTCAAACTTTAA 777 0.381 MSQRIPIGNAEDKILKQKMIEESEASQKNESKNVITSSEADSEKGRMVAVPETILYNEPKEAKIFPCLFCDKTFSSSQALGGHQNAHKEERALKKMEQKRIEEEMEAAMRYRPIFPYCYPYSNPIHHQAYPNLCGNLQALVGTQMNNVISTRLDSPFMMQVPKPPLHLEMINFLGENQTLALPITQRANPVDDDGVELRLFTSGEGVERNSNAQFLSNDLTTETRDLFGGSHVLAETNASSSSTTESTSEEFDLNLKL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi78g00108 258 SUPERFAMILY beta-beta-alpha zinc fingers 62 93 IPR036236 -
Vivi78g00108 258 MobiDBLite consensus disorder prediction 1 43 - -
Vivi78g00108 258 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 21 258 IPR044246 GO:0009788
Vivi78g00108 258 Coils Coil 86 106 - -
Vivi78g00108 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Vivi78g00108 258 MobiDBLite consensus disorder prediction 14 28 - -
Vivi78g00108 258 MobiDBLite consensus disorder prediction 237 258 - -
Vivi78g00108 258 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Vivi78g00108 258 MobiDBLite consensus disorder prediction 237 251 - -
Vivi78g00108 258 Gene3D Classic Zinc Finger 52 112 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi78g00108 28 102 C2H2 Transcription Factor Family AT5G01860 44.872 1.95e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi78g00108 zf-C2H2_6 2.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi78g00108 - - vvo:131614656 488.804