Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi78g00106 ATGTCTCAAAGAATTCCCATCGGAAATGCAGAAGACAAAATCTTAAAGCAAAAAATGATTGAAGAATCAGAGGCAGCACAAAAAAATGAATCACAGAATGTAATAACATCCTCTGAAGCTGATTCCGAGAAGGGCAAAATGGTAGCAGTCGCAGAGCCAATACTGTATAATGAACCCAAGGAAGCAGCGAAAATATTTCCTTGTCTTTTTTGTGACAAGACATTTTCGAGTTCACAAGCTCTTGGAGGGCATCAAAATGCTCATAAGGAAGAACGTGCCTTAAAAAAAATGGAGCAAAAAAGAATAGAGGAAGAAATGGAGGCCGCCATGAGGTATAGACCTATTTTTCCATACTGTTATCCTTATTCAAACCCTATTCACCATCAAGCATATCCCAATTTATGCGGCAACTTGCAAGCCCTAGTTGGCCCTCAGATGAACAATGTAATTTCTTCTAGGCTCCATTCTCCATCGGGTAGTTACGGAGGGATGTATCTGCCAAATACACCCACTTCACCATCTCCATTTATGATGCAAGTTCCAAAGCCACCACCACAGTTTGGGATGATTAATTTTTTAGGTGAAAATCAAACTCTTGCATTGCCAGTAACTCAAAGGGCAAACACTGCAGTTGATGGTGCAGTGGAATCGAGACTGTCTAGTCTAGCTAATCAAACCCCTCTATCTGGTGAGGATGCAGTGGAATTGAGACTTTTTACATCAGGTGAGGGTGTCGAAAGAAATTCAAATGCTGAGTTTCCTTCTAATGATCTTACAACTGAAACTCGTGATTTATTTGGAGGAAGCCAAGTTCTAGCAGAGACTAATGCGTCTTCATCATCAACAACTGAATCAACATCTGAGGAATTTGATTTGAATCTCGAACTTTAA 891 0.4018 MSQRIPIGNAEDKILKQKMIEESEAAQKNESQNVITSSEADSEKGKMVAVAEPILYNEPKEAAKIFPCLFCDKTFSSSQALGGHQNAHKEERALKKMEQKRIEEEMEAAMRYRPIFPYCYPYSNPIHHQAYPNLCGNLQALVGPQMNNVISSRLHSPSGSYGGMYLPNTPTSPSPFMMQVPKPPPQFGMINFLGENQTLALPVTQRANTAVDGAVESRLSSLANQTPLSGEDAVELRLFTSGEGVERNSNAEFPSNDLTTETRDLFGGSQVLAETNASSSSTTESTSEEFDLNLEL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi78g00106 296 Coils Coil 87 107 - -
Vivi78g00106 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Vivi78g00106 296 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 24 190 IPR044246 GO:0009788
Vivi78g00106 296 MobiDBLite consensus disorder prediction 273 296 - -
Vivi78g00106 296 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vivi78g00106 296 SUPERFAMILY beta-beta-alpha zinc fingers 64 94 IPR036236 -
Vivi78g00106 296 Gene3D Classic Zinc Finger 42 113 - -
Vivi78g00106 296 MobiDBLite consensus disorder prediction 273 289 - -
Vivi78g00106 296 MobiDBLite consensus disorder prediction 26 40 - -
Vivi78g00106 296 MobiDBLite consensus disorder prediction 22 42 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi78g00106 48 200 C2H2 Transcription Factor Family AT5G27880 29.891 1.76e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi78g00106 zf-C2H2_6 2.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi78g00106 - - vvo:131623757 585.489