Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi78g00105 ATGTCTGAAAGAATTTCTATTGGAAATACTGAAGACAAATGCTTGAAACGCAAAATGATTGAAGAATCAGAGATAGAACTGAGAAAGGAATCGAAAAACATTGCACCAACCTCTCAAGCTGATCAAGAGAAGGGCAAAATGGTTGAAGAGGTGGAGCCAAAACAGAATAAAGATTTATTGACTCCAAAGCTTGACATTAACACCAAGCCAACTTCCAATCTGTTGGAGAATGGTGAACGTTCAAGTTCATCCGAAAATGTTATTGGTGAAATTTTACCTAAGGAAGTGAAGGAATATCCCTGTCAATTTTGTGACAAGAAGTTCACAAATTTGCAAGCTCTTGGTGGTCACCAAAACGCTCATAAGAGCGAACGTAACTCAAAAAAAACTAAACAACAAAGGACGGAGGAGACAATCGTTTCCCCCCGAAGGTTTGAACTTACTTATTCAAACCCTTATCCTTATTCACGTCCTAGTCGCTATCAAGGGTCTTCCAATTTTCATGGCAACTTGCAACAACCAATTGGCACTCCAATTGGCACTCATATGAACAACACCACGCCTTCTAGGCTTGGTTTTCCATTCGGTAGCTACGGAGGAGGGATGTATATGCCAAATACACCCTCTCCACCACCTCCATTTGTATTGCCAAGGCCAAAGTCACCCCCTGCAATACCACAATTTAGGATGAATAATTATTTAGGTGGAAATCAAACTCCTGTGATTCCAATTCTTCAAAGGCCAAACATTGTGGAATTGGATTTTTTTCGTCAAGCGAATCAAACTCATTCATCCGGTGAGGGTGCTGAAGGAAGTTCCAATGCTCGATTTCCTTCTATTAATCTTCCAATAACACGTGATTTTATTGGAGAAAATCAACCTCTAGTAGAGTCCAATGTATCTTCTTCATCAACTGTGGAGGAATTTGACTTAAATCTCAAACTTTAA 948 0.3966 MSERISIGNTEDKCLKRKMIEESEIELRKESKNIAPTSQADQEKGKMVEEVEPKQNKDLLTPKLDINTKPTSNLLENGERSSSSENVIGEILPKEVKEYPCQFCDKKFTNLQALGGHQNAHKSERNSKKTKQQRTEETIVSPRRFELTYSNPYPYSRPSRYQGSSNFHGNLQQPIGTPIGTHMNNTTPSRLGFPFGSYGGGMYMPNTPSPPPPFVLPRPKSPPAIPQFRMNNYLGGNQTPVIPILQRPNIVELDFFRQANQTHSSGEGAEGSSNARFPSINLPITRDFIGENQPLVESNVSSSSTVEEFDLNLKL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi78g00105 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Vivi78g00105 315 MobiDBLite consensus disorder prediction 43 59 - -
Vivi78g00105 315 Pfam C2H2-type zinc finger 99 123 - -
Vivi78g00105 315 Gene3D Classic Zinc Finger 80 150 - -
Vivi78g00105 315 MobiDBLite consensus disorder prediction 116 137 - -
Vivi78g00105 315 MobiDBLite consensus disorder prediction 61 86 - -
Vivi78g00105 315 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 19 315 IPR044246 GO:0009788
Vivi78g00105 315 SUPERFAMILY beta-beta-alpha zinc fingers 97 126 IPR036236 -
Vivi78g00105 315 MobiDBLite consensus disorder prediction 27 86 - -
Vivi78g00105 315 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Vivi78g00105 315 MobiDBLite consensus disorder prediction 121 137 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi78g00105 73 158 C2H2 Transcription Factor Family AT1G67030 40.230 3.36e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi78g00105 zf-C2H2_6 2.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi78g00105 - - vvo:131614653 478.018