Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi78g00103 ATGTCTGAAAGAATTTCTATTGGAAATACTGAAGACAAATGCTTGAAACGCAAAATGATTGAAGAATCAGAGGTAGAACTAAGAAAAGAATCGAAAAACATTGCACCAACCTCTCAAGCTGATTTCGAGAAGGGAAAAATGGTTGAAGAGGTGGAGCCAAAATTGCATAAAGAATCCAAGGTAATAACACCATCAACTGGATCTAAAGATTTATTGACTTCAAGGCTTGACATTAACACCAAGCCAACTTCCAATCTGTTGGAGAATGGTGAACGTTCAAGTTCATCTGAAAATGTCATTGCTGGAGTTTCACCTAAGGAAGTGAAGGAATTTCCCTGTCAATTTTGTGACAAGAAGTTCACAAATTTGCAAGCTCTTGGTGGTCACCAAAACGCTCATAAGAGTGAACGTAACTTAAGAAAAAATAAACAACAAAGGAGGGAGGAGACAATCGTTTCCCCCCAAAGGTTTGAACTTACTTATTCAAACCGTTATCCTTATTCACGTCCTAGTCGCTATCAAGGGTCTTCCTATTTTCATGGCAACTTGCAACAACCAATTGGCACTCCAATTGGCACTCATATGAACAACACCACGCCTTCTAGGCTTGGTTTTCCATTCGGTAGCTACGGAGGGATGTGTATGCCAAAGTCACCTCCTGCAATACCACAATTTAGGATGAATAATTATTTAGGTGGAAATCAAACTCCTGTGCTGCCAATTCCTCAAAGGCCAAACATTGTGGAATTGGATTTTTTTGGTCAAGCTAATCAAACCCATTCATCCGGTGAGAGTGCTGAAGGAAGTTCCAATGCTCCATTTTCTTCTCGTGGTCCTCCAATAACACATGATTTTATTGGAGAAAATCAACTTCCAGAAGAGTTCAATGTGCCTTCTTCATCAACTGTGGAGGAACTCGACTTAAATCTCAAACTTTAA 939 0.3962 MSERISIGNTEDKCLKRKMIEESEVELRKESKNIAPTSQADFEKGKMVEEVEPKLHKESKVITPSTGSKDLLTSRLDINTKPTSNLLENGERSSSSENVIAGVSPKEVKEFPCQFCDKKFTNLQALGGHQNAHKSERNLRKNKQQRREETIVSPQRFELTYSNRYPYSRPSRYQGSSYFHGNLQQPIGTPIGTHMNNTTPSRLGFPFGSYGGMCMPKSPPAIPQFRMNNYLGGNQTPVLPIPQRPNIVELDFFGQANQTHSSGESAEGSSNAPFSSRGPPITHDFIGENQLPEEFNVPSSSTVEELDLNLKL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi78g00103 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Vivi78g00103 312 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 18 312 IPR044246 GO:0009788
Vivi78g00103 312 MobiDBLite consensus disorder prediction 133 150 - -
Vivi78g00103 312 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Vivi78g00103 312 MobiDBLite consensus disorder prediction 127 150 - -
Vivi78g00103 312 MobiDBLite consensus disorder prediction 258 277 - -
Vivi78g00103 312 MobiDBLite consensus disorder prediction 81 100 - -
Vivi78g00103 312 Gene3D Classic Zinc Finger 91 164 - -
Vivi78g00103 312 MobiDBLite consensus disorder prediction 258 286 - -
Vivi78g00103 312 MobiDBLite consensus disorder prediction 26 46 - -
Vivi78g00103 312 SUPERFAMILY beta-beta-alpha zinc fingers 109 138 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi78g00103 85 144 C2H2 Transcription Factor Family AT1G67030 49.180 1.43e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi78g00103 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi78g00103 - - vvo:131614653 510.375