Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi78g00088 ATGGAGGAACGACAGCCCGACCAAGAACAACACTGCCAGGTCATCACTCTCGGAACTCATTACCCCCTCCTCCCCGGCCCCCAATCAAACGACGATGACGACGGCGGATGCGCCTATTCAAAGGCGGTTCTCGTTGTCGACATGGTCTGGAACCTCGCCTTCGTGCTTGTCGCCGCCGCCGTCATCCTATCCACGTTCAACGAGCGTCCCTCCACTCCTCTGAGACTTTGGCTCTGTGGCTACGCCTTGGAGTGCGTTCTTCACGTGGCTTTTGTTTACTCTGAATATCGCCGTGATTCCTTCTCTCACACTCCTTACAGCATTGCGAAGAAGTTAGAGCCTATGAACACACTGGCATCATCTGTTTGGTGGGTTTTTGGATTTTATTGGATTGTTGTCGGTGGCCAACCACTTCTTGAAGATTCTCCGCGCCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGACGTATTTTTTATTATCTTCTGCATTGGGATGGCTTGTATAGTTTTCTTTGCTCTCTTCTGCATCATCCCAATAATAGCTTTAGCTTATGCGTTAAGAATCAGAGAAGGTGCTTCAGAAGATGATATCAGGTCACTTCCTATGTATAGATTTAGTCAGTCAAATGTAATGGTTATGGTTGATGATGACAACAACAAGCAGCTTGTCAAACCAAGAATCGGTTCATACAATCAAAGCCATATCAGCGAGTTATCTCTTCATCCTGATGATTCTGAATGTTGTATCTGCCTTAGTACATACGTTGATGGAACAGAACTGTATCGGCTACCCTGTACCCACCATTTTCACTGTGGATGCATCAGCCGATGGCTTCGGACAAAAGCAACTTGCCCGCTCTGCAAATTTAATATTCGAAGAGCCGACACATTGGTTTAA 900 0.4656 MEERQPDQEQHCQVITLGTHYPLLPGPQSNDDDDGGCAYSKAVLVVDMVWNLAFVLVAAAVILSTFNERPSTPLRLWLCGYALECVLHVAFVYSEYRRDSFSHTPYSIAKKLEPMNTLASSVWWVFGFYWIVVGGQPLLEDSPRLYWLTVVFLAFDVFFIIFCIGMACIVFFALFCIIPIIALAYALRIREGASEDDIRSLPMYRFSQSNVMVMVDDDNNKQLVKPRIGSYNQSHISELSLHPDDSECCICLSTYVDGTELYRLPCTHHFHCGCISRWLRTKATCPLCKFNIRRADTLV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi78g00088 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 297 IPR013083 -
Vivi78g00088 299 PANTHER TARGET OF ERK KINASE MPK-1 25 293 - -
Vivi78g00088 299 SUPERFAMILY RING/U-box 235 293 - -
Vivi78g00088 299 Pfam Ring finger domain 247 289 IPR001841 -
Vivi78g00088 299 ProSiteProfiles Zinc finger RING-type profile. 248 289 IPR001841 -
Vivi78g00088 299 SMART ring_2 248 288 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi78g00088 38 296 C3H Transcription Factor Family AT1G68070 45.552 1.44e-85 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi78g00088 - - tpra:123888220 525.783