Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi78g00082 ATGGACAATAACGTGGGTCAAGACTCAATTGATAAGTCTAGGGTTTTAAATATTAAGCCATTGAGGACTCTTGTTCCTGTGTTCCCTTCACCGTCTAATCCTGCTTCATCTTCAACTCCACAAGGTGGTGCTCCTTTTGTTTGTGCTTCTCCTGCTGGTCCTTTTCCAACTGGTGTTGCGCCTTTTTATCCGTTCTTTGTTTCGCCCGAGACTCAGAGGCTTTCCGACCAGAATGCACCGAATCCAACCCCGACCCCGATATCTACTGCTGTTCCGATTAATTCATTCAAGACTCCAACTGCGGCGACAAATGGAGATGTTGGTTCGTCACGGAGGGCTAGCCAGAATCGGGCTGCACATCTCATGGAGGAAGAAGGCTACAATAATGCTGAGATAAATGAACTTGATTTAGAAGATGGAACTGGGAATGGGAGTTCAAAGCGGAAGAAGAGGGGAAGGGCGAAGCGTGGTAGCGGTGCTGGTGCTAGTGCTGATGGCGGTGTTGGTGGTGTGGTTCCTGCTGATGTTGATCTGGATGTAGTGGCTAATGATATTATTCAATCAATTAATCCCATGGTTTTTGATGTAATAAATCATCCGGATGGTAGCAGGGACTCAGTTTCATATACGCTTATGATATATGAAGTGATGCGAAGAAAGCTTGGACAAATTGAAGAGTCAATTAAGGACACTTATGGAGCTAAGCGGCCTGATTTGAAGGCAGGCAATGTTATGATGACCAAAGGGGTTAGGAGTAACAGCAAGAAAAGGATTGGACTTGTGCCTGGTGTTGAGATTGGGGATATTTTCTTTTTCCGATTTGAGTTGTGCTTAGTGGGATTACATGCACCTTCTATGGCTGGAATCGATTATCTGGGTTCCAAAGCAAGTCAAGAGGAAGAGCCATTGGCTGTTAGTATTGTCTCGTCCGGAGGGTATGAAGATAATACTGACGATGGGGATGTGCTGATTTACAGTGGCCAAGGTGGAGTTAATCGCGAGAAGGGAGCAAGTGATCAAAAGCTTGAAAGGGGTAATCTTGCAATGGAGAAGAGCATGCATAGAGGTAATGATGTGAGAGTAATTAGAGGTTTGAAGGATGTAATGCATCCATCAGGGAAGGTATATGTCTATGACGGTATTTACAAGATTCAGGATTCATGGGTGGAGAAAGCAAAGTCCGGTTTTAATGTATTCAAGTATAAATTAGTAAGGATGCCTGGACAGCCTGAAGCATATTCAACATGGAAATCCGTTCAACAATGGACTGATAAGTCGGCTCCAAGAACCGGGGTCATATTGCCTGATCTTACTTCTGGGGCTGAAAAAGTGCCTGTTTGTCTTGTGAACGATGTTGACAACGAGAAGGGCCCTGCATATTTCACTTATATCCCTACTCTCAAGAATTTGAGAGCAATTGCTCCTGTGGAACCTACTGCTGGATGTTCTTGTATTGGTGGATGTCAACCTGGAAATTACAACTGTTCCTGCATTCAAAAAAATGGAGGTTTACTTCCGTATTCTGCTTCTGGGTTAGTCGCGGATCTAAAATCCGTGATACATGAGTGTGGTCCTTCTTGTCAATGTCCCTCTACTTGCCGAAACCGGGTTTCCCAAGTTGGCCTGAAATTTCGTTTGGAGGTGTTCAGAACCAAGAATAAAGGTTGGGGTCTAAGATCGTGGGATGCTATTCGTGCTGGAACTTTTATATGTGAGTATGCAGGGGAAGTCATAGACAGTGCTAGGGCGGAGATGCTTGGTGGTGAAAACGAAGACGAGTACATTTTTGATTCTACTCGCATCTATCAGCAGCTGGAAATTTTTCCTGCCGACATTGAAGCTCCAAAGATCCCATCCCCGCTTTATATAACGGCAAAAAATGAAGGAAATGTTGCTCGGTTTATGAATCATAGCTGCTCTCCAAATGTGTTGTGGCGTCCGATTGTACGTGAAAATAAGGATGAGTCAGATCTCCACATTGCTTTCTTTGCAATTAGACACATCCCTCCTATGGTGGAGTTAACTTATGATTATGGGATAAATCTTCCTCTCAAAGCTGGTCAGAGGAAAAAGAAATGCTTATGTGGATCTGTGAAATGCAGGGGCTACTTTTGTTAA 2118 0.4405 MDNNVGQDSIDKSRVLNIKPLRTLVPVFPSPSNPASSSTPQGGAPFVCASPAGPFPTGVAPFYPFFVSPETQRLSDQNAPNPTPTPISTAVPINSFKTPTAATNGDVGSSRRASQNRAAHLMEEEGYNNAEINELDLEDGTGNGSSKRKKRGRAKRGSGAGASADGGVGGVVPADVDLDVVANDIIQSINPMVFDVINHPDGSRDSVSYTLMIYEVMRRKLGQIEESIKDTYGAKRPDLKAGNVMMTKGVRSNSKKRIGLVPGVEIGDIFFFRFELCLVGLHAPSMAGIDYLGSKASQEEEPLAVSIVSSGGYEDNTDDGDVLIYSGQGGVNREKGASDQKLERGNLAMEKSMHRGNDVRVIRGLKDVMHPSGKVYVYDGIYKIQDSWVEKAKSGFNVFKYKLVRMPGQPEAYSTWKSVQQWTDKSAPRTGVILPDLTSGAEKVPVCLVNDVDNEKGPAYFTYIPTLKNLRAIAPVEPTAGCSCIGGCQPGNYNCSCIQKNGGLLPYSASGLVADLKSVIHECGPSCQCPSTCRNRVSQVGLKFRLEVFRTKNKGWGLRSWDAIRAGTFICEYAGEVIDSARAEMLGGENEDEYIFDSTRIYQQLEIFPADIEAPKIPSPLYITAKNEGNVARFMNHSCSPNVLWRPIVRENKDESDLHIAFFAIRHIPPMVELTYDYGINLPLKAGQRKKKCLCGSVKCRGYFC 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi78g00082 705 Gene3D SET domain 426 704 IPR046341 -
Vivi78g00082 705 Gene3D - 241 425 IPR036987 -
Vivi78g00082 705 MobiDBLite consensus disorder prediction 73 168 - -
Vivi78g00082 705 SUPERFAMILY PUA domain-like 241 423 IPR015947 -
Vivi78g00082 705 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 242 424 - -
Vivi78g00082 705 Pfam SAD/SRA domain 258 409 IPR003105 -
Vivi78g00082 705 Pfam SET domain 555 679 IPR001214 GO:0005515
Vivi78g00082 705 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 16 704 IPR025794 GO:0016571
Vivi78g00082 705 MobiDBLite consensus disorder prediction 73 116 - -
Vivi78g00082 705 ProSiteProfiles Post-SET domain profile. 689 705 IPR003616 -
Vivi78g00082 705 Pfam Pre-SET motif 438 536 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi78g00082 705 SMART G9a_1 254 409 IPR003105 -
Vivi78g00082 705 ProSiteProfiles YDG domain profile. 259 405 IPR003105 -
Vivi78g00082 705 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 117 697 - -
Vivi78g00082 705 ProSiteProfiles SET domain profile. 544 679 IPR001214 GO:0005515
Vivi78g00082 705 SUPERFAMILY SET domain 420 685 IPR046341 -
Vivi78g00082 705 SMART preset_2 434 528 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi78g00082 705 SMART set_7 544 685 IPR001214 GO:0005515
Vivi78g00082 705 ProSiteProfiles Pre-SET domain profile. 480 541 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi78g00082 11 704 Su(var)3-9 homologs AT1G73100 48.527 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi78g00082 SAD_SRA 3.1e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi78g00082 K24405 - gmx:100805932 1107.43