Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi78g00061 ATGCATCATAACTCAACCATGAATACATTACGTTATCTTTTGTTATCCATCCTCTTATTCATCATTCCTGTTGTTGTTGTTGCCATTGCTAATGCAGATGAAGGTGATGATTACATGTCTCAACTTTTGAAAGCTCTCACCCCAACTCCAACAGGTTGGTCTAACAAAACTCACTTTTGCAAATGGAACGGCGTTGTTTGCATGTCAGGTCGAGTTAGTGCCATCACACTCCCATCATCCAACCTCACTGGAACACTCCCTCCCGATCTCGACTCTCTTATTGATCTCACCCACATCGATCTCCACAACAACTCACTCACAGGTCCTTTCCCTAATTTGTTTGGTCTCTCCCTTCTCCAAACTGCATCCTTTGGTCACAATAAGTTCACCTCCATTCCAGAGGATTGCTTTCGCGGGCTACCACATCTAAGAACGCTAAACCTCAGTAATAACTTGAATCTCGTACCATGGTTATTCCCTAAGAATTTAAGAGATTCATCATTGATGCAAACCCTCGATCTCGAAGCTACAAATATCCTAGCAACCTTGCCATCAGAAATGTTCGATTGGTTTCCAAGTCTGCATACTGTTTTTCTTTCTCACAACAACATGACTGGAACACTCCCGGTGTCTCTTGGGAAATCTGCCGTAAGGTATTTACGGTTCAACAACCAAGGAGGGAAGATGGACCGGTTCTCAGGTTCCATTGATGTGATATCATCAATGAAGTTCTTGTCTCAAGCATGGCTTCACAACAACGCCTTCACCGGTCCAATTCCTAACTTGTCTAGTTCCAAATATTTGTTTGATTTGCAACTTCACTCAAATATCTTAACTGGTTTGGTTATACCTTCTTTGTTCCCTCTCTCTACCTTGAAAAATATCTCAATAGATGATAATTTGCTTCAGGGACCGGTGCCTGTGTTTCCTAAGAATATTAAAGCAACTTGGGAAGATAACAACTTTTGCGTTGGACCATGTGATCCACGGGTCACGATTTTGCTTCAAATTTTTGAAGCTTTTGGATATCCTGCTTATCTTTCAAGTGAAGTAAACCATGCTTGTTCAGAGGGATCATTGTTTATGTGTCAAAGTGGAAAAATTGTGACCATTGATTTGAGGAATCAGAGTTTAACAGGAACTATCTCTATGGCATTTTCCAATTTAACAAGTTTAGTGAACTTGAATCTTGGTGGCAATAATTTGACAGGTTCAATACCACATAGTCTTGCAACTTTGACTCAACTCCGACTTCTTGATGTTTCTGATAATAATCTATCTGGACGAGTTCCCGAATTTTCATCCAAGGTGAAGTTAATTACAAGAGGCAATACTTTGCTTGGACGAGGTGGAGGCACATCTAAAACAGCAGGGTTTAGACCTCTTTGGATTGCAGGGGCATCAATGTTTAGTGTTGGAATTGTAATATTTATTGTGATTATTTGTAAACGTAAGAGGTATTCCATTACAGTAAAGAGGTTGATCTTCAGAAGTACAAGGAAATCTATAGACTACAATGTGGAGGATTTTATACAAACTTATAACTTGTCGGTACCAATTAAGCAATATAGATACGCAGAAGTGAAAAGAATGACAAATTCTTTCAGAGATCAATTAGGTCGAGGAGGATATGGTATTGTGTACAAAGCAAGTTTACCTGATGGTCGTCAAGTGGCAGTGAAAATGATAAACGAGTCAAAGGGAAATGGAGAAGAATTCATAAACGAAGTTGCTAGCATTAGTCGAACTTCACATGTGAACATTGTCTCACTAGTGGGTTTTTGTTATGAGAATAAAAGAGCACTCATATATGAATTCATGCCCAATGGTTCACTAGACAAGTATATCTTCAAAAATGGATTTCCGGATGCTATTTGTAATTTGGATTGGAAAACATTGTACCAAATTGCAGTAGGAATCGCTCGAGGGCTAGACTACTTGCATCAAGGATGTATTTCAAGAATTTTGCATCTTGATATCAAACCTCAGAATATTCTTTTGGATGAAGATTTTTGTCCAAAAATTTCTGATTTTGGACTAGCTCAAATTTGTCGAAGGAATGATAGTATTGTGTCCATACTTGGCACACGGGGAACTATAGGATATATAGCTCCTGAAGTATTTAGTCGAACATTTGGTGCAATTTCTCACAAGTCTGATGTATATAGTTATGGTATGTTGATTCTAGAAATTATTGGTGGAAGAAAAAATTATGACACTGGTGGATCGTGTACTTCTGAAATGTACTTTGCAGATTGGATTTATAAGGATCTTGAGTTAAGCCATAACCTTGTGAACGGTTTAGCATACTCAGAGGAAGAAAGGGATTTGATAAGAAAGATTACTATGATTAGTCTATGGTGCATTCAAACAAATCCATCAGATAGACCATCGATGAATAGAGTAATAGAAATGCTACAAGGACCACTTGAGTCGATAGCATATCCTCCAAAACCATTCTTATATTCTCCTGAAATGCTATCATTACAAACTTCGTATGAGTATTCCAATAATTTGATAGGGGAAAATTCAACAGCCTTACTGAAGAATGGTTCCACAAAATCAAATAACTTCTGCAAAGACACAAGTGAAAATATTAGTGTAATGTAA 2610 0.3801 MHHNSTMNTLRYLLLSILLFIIPVVVVAIANADEGDDYMSQLLKALTPTPTGWSNKTHFCKWNGVVCMSGRVSAITLPSSNLTGTLPPDLDSLIDLTHIDLHNNSLTGPFPNLFGLSLLQTASFGHNKFTSIPEDCFRGLPHLRTLNLSNNLNLVPWLFPKNLRDSSLMQTLDLEATNILATLPSEMFDWFPSLHTVFLSHNNMTGTLPVSLGKSAVRYLRFNNQGGKMDRFSGSIDVISSMKFLSQAWLHNNAFTGPIPNLSSSKYLFDLQLHSNILTGLVIPSLFPLSTLKNISIDDNLLQGPVPVFPKNIKATWEDNNFCVGPCDPRVTILLQIFEAFGYPAYLSSEVNHACSEGSLFMCQSGKIVTIDLRNQSLTGTISMAFSNLTSLVNLNLGGNNLTGSIPHSLATLTQLRLLDVSDNNLSGRVPEFSSKVKLITRGNTLLGRGGGTSKTAGFRPLWIAGASMFSVGIVIFIVIICKRKRYSITVKRLIFRSTRKSIDYNVEDFIQTYNLSVPIKQYRYAEVKRMTNSFRDQLGRGGYGIVYKASLPDGRQVAVKMINESKGNGEEFINEVASISRTSHVNIVSLVGFCYENKRALIYEFMPNGSLDKYIFKNGFPDAICNLDWKTLYQIAVGIARGLDYLHQGCISRILHLDIKPQNILLDEDFCPKISDFGLAQICRRNDSIVSILGTRGTIGYIAPEVFSRTFGAISHKSDVYSYGMLILEIIGGRKNYDTGGSCTSEMYFADWIYKDLELSHNLVNGLAYSEEERDLIRKITMISLWCIQTNPSDRPSMNRVIEMLQGPLESIAYPPKPFLYSPEMLSLQTSYEYSNNLIGENSTALLKNGSTKSNNFCKDTSENISVM 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi78g00061 869 Pfam Leucine rich repeat 96 151 IPR001611 GO:0005515
Vivi78g00061 869 Pfam Leucine rich repeat 370 426 IPR001611 GO:0005515
Vivi78g00061 869 FunFam Leucine-rich repeat receptor-like kinase 329 450 - -
Vivi78g00061 869 Gene3D Ribonuclease Inhibitor 329 450 IPR032675 -
Vivi78g00061 869 Gene3D Ribonuclease Inhibitor 39 327 IPR032675 -
Vivi78g00061 869 SUPERFAMILY Protein kinase-like (PK-like) 521 839 IPR011009 -
Vivi78g00061 869 FunFam PR5-like receptor kinase 607 816 - -
Vivi78g00061 869 ProSitePatterns Protein kinases ATP-binding region signature. 539 561 IPR017441 GO:0005524
Vivi78g00061 869 PANTHER OSJNBA0070M12.3 PROTEIN 18 812 - -
Vivi78g00061 869 Gene3D Phosphorylase Kinase; domain 1 507 606 - -
Vivi78g00061 869 Pfam Protein tyrosine and serine/threonine kinase 535 806 IPR001245 GO:0004672|GO:0006468
Vivi78g00061 869 SMART serkin_6 533 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi78g00061 869 ProSiteProfiles Protein kinase domain profile. 533 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi78g00061 869 SUPERFAMILY L domain-like 58 439 - -
Vivi78g00061 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Vivi78g00061 869 Gene3D Transferase(Phosphotransferase) domain 1 607 814 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi78g00061 520 825 Receptor kinase-like Gene Family AT5G38280 59.807 3.20e-127 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi78g00061 PK_Tyr_Ser-Thr 4.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi78g00061 - K00924 vvo:131612229 773.467