Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi78g00057 ATGGTGAGAAAGAGAAAGCTCGTCGCTAAATCTTCTCAACCAGAGGAACCACCACTCAAACAGCATCACTCTCAGCCCGAACCCGAACCGGAACCCTATATTCCCACCGAAGAATACGAAGAAGTTGAGGAGGAAGTTGAGTATGAAGAGGTTGAGGAAGTAGAGGAGGAGGAAGAAGAGGAGGTGGAGGAGGAAGAAGAAGACGGAGGAGAACAAGCTCAAGGTGGAGAATACGTGGAAGAAGACGATGAACCGATTAAGGATCTAGTGGAGCCTTTCACAAAGGAACAGATCGCGACTCTCCTTTGCGATGCGGCGGCTAAACACCGCGATGTCGCGGACCGGATCAGGAAGATTGCGGATGGAGATGCTTCGCATAGGAAGATTTTTGTTCATGGTTTGGGGTGGGACACGACTTCCGCAACGCTGATTAACGCCTTTTCGCAATACGGTGAAATTGAGGATTGTAAAGCTGTTACTGATAAGGTTTCTGGGAAATCTAAGGGTTATGGGTTTATTCTTTTTAAAAAGAGGAGTGGGGCGAGGAATGCTTTGAAGGAGCCGCAGAAGAAGATTGGGAACCGGATGACGGCGTGTCAGCTGGCATCTATTGGTCCTGTGCAGCAAACTCCGCAGCCGACGGCGCAGTTGGTGCCACCTGGGTCGGAGTATACACAGAGGAAGATTTATATCAGTAATGTTGGTCCTGAATTGGATCCGCAGAAGCTGTTTGCTTATTTCTCGAGGTTTGGGGAAATTGAGGAAGGGCCGTTAGGGCTTGACAAGGCGACGGGGAAGCCGAAAGGGTTTTGCTTGTTTGTTTATAAGAGTCCTGAGAGTGCAAGGAGGTCGTTGGAGGAGCCTCATAAGGAATTTGAGGGACATATTTTGCATTGCCAGAGGGCAATTGATGGTCCTAAGGCGGGGAAGACACAACATCAACAACCTCAGCAGCAACAACACGTGAGTTCATTGAATCAATTGAACCAACTGAACCCATTGACTCAGAGGACACAATTTCAGAGAAATGACAATGTTGGATATGTTGGTGGTAGTAGTGTTGCAGTTAGCCAACCAGGGCATTTAATGGCACCGGCTGGACCAACAATCGGGTACAACCAGGCCGCCGCTTCTGCTGCACAGGGGCTGAACCCGGTGCTGACGCCTGCACTTGGACAGGCTTTGACGGCACTACTTGCATCTCAGGGTGCTACTTTGGGGCTGAGTGATTTGTTGGGGAGTCTTGGAACGAGTAATGCTCTTAATCATGGTGGTGTTCCTGCTGCAGGTCATGGAGTTCAGAGTGGGTACAGTGCTCAGCCTACTATAAGTCCATCAGTTATGGGAGCATATGGGAATTCAGTACCACAGGTTGGGTTGCAGGTGCAATATCCCAACCAGCAAATTGGACAGGGTGGTTCCGGAAGAGGGCAATATGGCGGTTCTGCGCCTTACATGGGGCACTAA 1467 0.4983 MVRKRKLVAKSSQPEEPPLKQHHSQPEPEPEPYIPTEEYEEVEEEVEYEEVEEVEEEEEEEVEEEEEDGGEQAQGGEYVEEDDEPIKDLVEPFTKEQIATLLCDAAAKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKKRSGARNALKEPQKKIGNRMTACQLASIGPVQQTPQPTAQLVPPGSEYTQRKIYISNVGPELDPQKLFAYFSRFGEIEEGPLGLDKATGKPKGFCLFVYKSPESARRSLEEPHKEFEGHILHCQRAIDGPKAGKTQHQQPQQQQHVSSLNQLNQLNPLTQRTQFQRNDNVGYVGGSSVAVSQPGHLMAPAGPTIGYNQAAASAAQGLNPVLTPALGQALTALLASQGATLGLSDLLGSLGTSNALNHGGVPAAGHGVQSGYSAQPTISPSVMGAYGNSVPQVGLQVQYPNQQIGQGGSGRGQYGGSAPYMGH 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi78g00057 488 SUPERFAMILY RNA-binding domain, RBD 211 318 IPR035979 GO:0003676
Vivi78g00057 488 Gene3D - 209 322 IPR012677 -
Vivi78g00057 488 SMART rrm1_1 228 300 IPR000504 GO:0003723
Vivi78g00057 488 SMART rrm1_1 128 200 IPR000504 GO:0003723
Vivi78g00057 488 Gene3D - 35 208 IPR012677 -
Vivi78g00057 488 Coils Coil 39 68 - -
Vivi78g00057 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 195 IPR000504 GO:0003723
Vivi78g00057 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 297 IPR000504 GO:0003723
Vivi78g00057 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 204 IPR000504 GO:0003723
Vivi78g00057 488 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 37 308 - -
Vivi78g00057 488 MobiDBLite consensus disorder prediction 466 488 - -
Vivi78g00057 488 MobiDBLite consensus disorder prediction 1 82 - -
Vivi78g00057 488 MobiDBLite consensus disorder prediction 8 27 - -
Vivi78g00057 488 SUPERFAMILY RNA-binding domain, RBD 125 209 IPR035979 GO:0003676
Vivi78g00057 488 MobiDBLite consensus disorder prediction 33 82 - -
Vivi78g00057 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 310 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi78g00057 214 312 C2H2 Transcription Factor Family AT2G19380 34.000 8.39e-11 62.4