Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi78g00052 ATGCTGCACCTGCTGGGGGAGGTGGGAAGCAACGGTTGCGTTGGACGTCGGATCTTCATGACCGATTTGTGGATGCTATTACGCAACTTGGTGGACCAGATAGTGGGAGCAACGCCAAAAGGTGTTCTTAGAGTGATGGGGGTGCCTGGTCTGACCATTTATCATGTTAAAAGTCATTTACAGAAGTATCGTTTGGCGAAGTACTTGCCTGAATCACCAGCTGATGATTCTAAGGATGAGAAAAGAAATTCTGGAGACAGCATTTCTGGCGCTGATTCTTCCCCGGGATTGCAAATCAATGACGCACTACGGATGCAGATGGAGGTTCAAAAACGTTTGCATGAACAACTTGAGGTTCAAAAGCAATTACAGATGAGAATTGAAGCTCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAACAGAAATTAGGCAGCACCTTGGCAGCGTCAGAAACTCCATTGCCCCATGATAAGCAAAATCATTCTGTATCGGAGCCTTCTGGGTCCAGTGATGCCCTTGCAGGCACTTTTCCTCCACATAAAAAACAGAGAATTGATGAAGGTTCAAAGGATGGTTTCATTGCATCCCAAGTTACAAGAAAGACTACACAGAAGAATGATTGTAATGTTGGCTGTTTGGATCCGAACTTGTATGAAGAAGATGCTGGTTTCGGATTTGATTTGGAAACAGAAAATGACGACGACAATGAGAGTGAGCAGTAA 726 0.4435 MLHLLGEVGSNGCVGRRIFMTDLWMLLRNLVDQIVGATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADDSKDEKRNSGDSISGADSSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLAASETPLPHDKQNHSVSEPSGSSDALAGTFPPHKKQRIDEGSKDGFIASQVTRKTTQKNDCNVGCLDPNLYEEDAGFGFDLETENDDDNESEQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi78g00052 241 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 37 182 IPR044848 GO:0003700
Vivi78g00052 241 MobiDBLite consensus disorder prediction 71 86 - -
Vivi78g00052 241 MobiDBLite consensus disorder prediction 71 97 - -
Vivi78g00052 241 SUPERFAMILY Homeodomain-like 37 65 IPR009057 -
Vivi78g00052 241 Pfam MYB-CC type transfactor, LHEQLE motif 97 143 IPR025756 -
Vivi78g00052 241 Coils Coil 100 120 - -
Vivi78g00052 241 MobiDBLite consensus disorder prediction 151 209 - -
Vivi78g00052 241 Gene3D - 7 69 - -
Vivi78g00052 241 NCBIfam myb-like DNA-binding domain, SHAQKYF class 37 66 IPR006447 GO:0003677
Vivi78g00052 241 MobiDBLite consensus disorder prediction 151 172 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi78g00052 46 221 G2-like Transcription Factor Family AT2G01060 51.397 4.79e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi78g00052 Myb_CC_LHEQLE 4.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi78g00052 - - tpra:123889278 360.147